PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g21780
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 264aa    MW: 30175.8 Da    PI: 7.5326
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g21780genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.83e-1177122454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h+e+ErrRR+riNs +++Lr+ll  +      K +Ka+ L k+v+ +++L
  CA10g21780  77 NHKEAERRRRQRINSHLHTLRTLLSCN-----SKTDKASLLAKVVQRVREL 122
                 8***********************997.....7************998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-1370133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.73E-1071125No hitNo description
PROSITE profilePS5088815.14873122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-1276140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-977122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-1079128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MQQQDYFQEN FDFCQYLTKN KPSSSDHNNM KMGEYTYGFD IKGIKNFCSS SSIYPHHMEF  60
QETIENNNNT PEARAINHKE AERRRRQRIN SHLHTLRTLL SCNSKTDKAS LLAKVVQRVR  120
ELKEQTSKIM QSETNFPSET DEITVLSSND CLEDGRSLIK ASLCCEDRLN LIPDLIETLK  180
SLGLSPLRAE MVTLGGRIRN VVILAVDHRK ESNNNSTDDD AEEEESLLLL RDALRSIIQR  240
SSYGSTGERG KKRRVLKHGT TNY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17385RAINHKEAERRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016544923.10.0PREDICTED: transcription factor bHLH106
SwissprotQ9LET07e-51BH107_ARATH; Putative transcription factor bHLH107
TrEMBLA0A1U8ECH50.0A0A1U8ECH5_CAPAN; Putative transcription factor
TrEMBLA0A2G2Y0Y60.0A0A2G2Y0Y6_CAPAN; transcription factor bHLH106
STRINGSolyc10g078380.1.11e-132(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128411718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.16e-50bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]