PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g22230
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 308aa    MW: 35260.5 Da    PI: 8.5013
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g22230genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.9e-06324223
                EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                +C+ Cg sF  + +Lk+H+++H
  CA10g22230  3 VCEECGVSFQKPAHLKQHMQSH 24
                6*******************99 PP
2zf-C2H216.32.8e-053054123
                EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                + C+  dC  +++rk++L+rH+ +H
  CA10g22230 30 FMCHvdDCQSRYRRKDHLTRHLLLH 54
                89********************998 PP
3zf-C2H214.40.000115984123
                EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                ++Cp   C+ +Fs + n++rH +  H
  CA10g22230 59 FECPvdGCKSTFSFQGNMTRHVKEmH 84
                89********************9988 PP
4zf-C2H220.21.6e-0698122123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 y+C+   Cgk+F+  s L++H  +H
  CA10g22230  98 YVCSeaGCGKVFKYASKLRKHEDSH 122
                 99*******************9888 PP
5zf-C2H221.18.4e-07189213223
                 EET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                 kC+  dC  +Fs++snL +Hi++ H
  CA10g22230 189 KCEfqDCQHTFSTRSNLAQHIKSvH 213
                 79999*****************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0076224IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.38229IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-5320IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.32E-10354No hitNo description
PROSITE patternPS000280424IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-122156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.163054IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.5153059IPR007087Zinc finger, C2H2
PROSITE patternPS0002803254IPR007087Zinc finger, C2H2
SuperFamilySSF576676.46E-64185No hitNo description
Gene3DG3DSA:3.30.160.609.0E-65786IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00315984IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.4115989IPR007087Zinc finger, C2H2
PROSITE patternPS0002806184IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-795122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.93E-596122No hitNo description
SMARTSM003550.00198122IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.42798127IPR007087Zinc finger, C2H2
PROSITE patternPS000280100122IPR007087Zinc finger, C2H2
SMARTSM003558.8130155IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280132155IPR007087Zinc finger, C2H2
SMARTSM0035513158179IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.7E-6169211IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.73E-9169226No hitNo description
SMARTSM003550.001188213IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.214188218IPR007087Zinc finger, C2H2
PROSITE patternPS000280190213IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.2E-5212241IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.9219245IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280221245IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MNVCEECGVS FQKPAHLKQH MQSHSIERPF MCHVDDCQSR YRRKDHLTRH LLLHQGKLFE  60
CPVDGCKSTF SFQGNMTRHV KEMHEQSASP KVDLPKEYVC SEAGCGKVFK YASKLRKHED  120
SHVKLESIEA LCLEPGCMKH FTNEKCLKEH IESCHQHIVC EICGTKQLKK NIKRHLRTHE  180
EGPISERIKC EFQDCQHTFS TRSNLAQHIK SVHLGAKPFS CSISGCGMKF AFKHVRDKHE  240
KSGCHVYTPG DFEEADELFL SRPRGGRKRE PTLFESIMRK RITPPSGTDP AFNQTPEYLV  300
VTLSGIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A1e-16615019155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D1e-16615019155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8821790.0DQ882179.1 Lycopersicon esculentum transcription factor IIIA mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016543989.10.0PREDICTED: transcription factor IIIA isoform X1
SwissprotQ84MZ41e-122TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2G2Y1L40.0A0A2G2Y1L4_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000185590.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-124transcription factor IIIA