PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g04690
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family SBP
Protein Properties Length: 145aa    MW: 16176.6 Da    PI: 9.964
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g04690genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP41.53.6e-13851164677
                 TSSEEETTT--SS--S-STTTT-------S-- CS
         SBP  46 CsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                   rfh l efD++k+sCr++L +hner+rk++
  CA11g04690  85 LLRFHLLAEFDDGKQSCRKHLPGHNERQRKPH 116
                 469**************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114111.63121115IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.2E-1086119IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.107.2E-486102IPR004333Transcription factor, SBP-box
PfamPF031108.0E-787114IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MRGVGNIFGS VVGAFSGEDK SGSISTDSSL IDLKPGRFPD HVTANIFKYP KSMPSFTTSE  60
YIFQAKRMHQ VLLVSTKAEF SLDTLLRFHL LAEFDDGKQS CRKHLPGHNE RQRKPHIGMH  120
SGYKLFLSFA IKVVLNFAYC SFTL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016545418.15e-44PREDICTED: squamosa promoter-binding-like protein 6
RefseqXP_016545419.15e-44PREDICTED: squamosa promoter-binding-like protein 6
TrEMBLA0A2G2YDK21e-102A0A2G2YDK2_CAPAN; Uncharacterized protein
STRINGSolyc03g114850.2.12e-27(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51871639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.14e-11SBP family protein