PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA11g05370

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

WRKY

Protein Properties

Length: 250aa MW: 27475.2 Da PI: 8.2629

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA11g05370	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.6	7.3e-30	31	90	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt + +Cpv+k+v+r+ ed +++++tYeg+Hnh+ CA11g05370 31 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSpTCPVRKQVQRCCEDMSILITTYEGTHNHS 90 58************************999**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.9E-31	19	92	IPR003657	WRKY domain
SuperFamily	SSF118290	5.89E-27	25	92	IPR003657	WRKY domain
PROSITE profile	PS50811	27.714	26	92	IPR003657	WRKY domain
SMART	SM00774	2.2E-34	31	91	IPR003657	WRKY domain
Pfam	PF03106	3.0E-26	32	89	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MARISRNHDE DEDEDEXARV SIRAVCGTTT MNDGCQWRKY GQKIAKGNPC PRAYYRCTVS 60 PTCPVRKQVQ RCCEDMSILI TTYEGTHNHS LPFSATAMAS TTSAAASMLR CTSSSTSPLP 120 QQSGLPNVNQ NLHGKFNFTN SNSNNLLPTY NNNASTFYLP PKTSISTCQS HPTITLDFTT 180 NSSLSSTHHT LISSQRYPSN SLKFSTPISP STSSTYLGRP CFSHQPLMIT SKNNQNTIEY 240 SGEVRNSDD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-22	23	92	2	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006357268.1	5e-87	PREDICTED: probable WRKY transcription factor 72
Swissprot	A0A3Q7GFB5	2e-53	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A2G2VLZ0	1e-151	A0A2G2VLZ0_CAPBA; Uncharacterized protein
STRING	Solyc05g007110.2.1	3e-80	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1945	24	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	3e-45	WRKY DNA-binding protein 9

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]