PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g06690
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 269aa    MW: 30188.4 Da    PI: 7.2345
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g06690genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025124146123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C k F ++  L  H++ H
  CA11g06690 124 FECQYCFKQFANSQALGGHQNAH 146
                 89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.36E-6122151No hitNo description
Gene3DG3DSA:3.30.160.601.1E-4122150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.427124151IPR007087Zinc finger, C2H2
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MAKDVVSSTF QSPSSNINGE NDHEPSSKSC VENNKRLKIF GFELGQSDAL KLPLCTGSRE  60
ESDHKLGFEL IDPKKSPKEI QDISSKEDQE SVNSSSASTI SSGNIRDHQE KILASSNEEL  120
LKKFECQYCF KQFANSQALG GHQNAHKKER MRKKRLQLQA RKASLSCYLQ PFHHQNYNNN  180
NNIINYQVYD PQFTVYEESQ ISFSPYDNQD YQVSSTGGKW PFHQESNCTF TLTHGGNYMK  240
PPSTSLANSA TEQKSSCKPL DLQLGLSL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-179HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016546675.10.0PREDICTED: zinc finger protein 5
TrEMBLA0A1U8ETH80.0A0A1U8ETH8_CAPAN; Uncharacterized protein
TrEMBLA0A2G2YE490.0A0A2G2YE49_CAPAN; zinc finger protein 5
STRINGSolyc05g006310.1.11e-104(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51362130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.12e-14zinc finger protein 5