PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g08370
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family TALE
Protein Properties Length: 112aa    MW: 13255.1 Da    PI: 10.2129
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g08370genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox314.3e-1054872255
                SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55
                 +yp+++++  LA+++gL+ +q+ +WF N+R ++
  CA11g08370 54 WPYPTEADKNSLAESTGLDPKQINNWFINQRKRH 87
                59*****************************985 PP
2ELK33.31e-11728122
         ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                ELK++LlrK++++L+sLk EFs
  CA11g08370  7 ELKDRLLRKFGSHLSSLKLEFS 28
                9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5121310.196727IPR005539ELK domain
PfamPF037892.8E-8728IPR005539ELK domain
SMARTSM011888.4E-6728IPR005539ELK domain
PROSITE profilePS5007112.9082790IPR001356Homeobox domain
SuperFamilySSF466893.98E-2128101IPR009057Homeodomain-like
SMARTSM003894.2E-142994IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-293292IPR009057Homeodomain-like
CDDcd000861.22E-113991No hitNo description
PfamPF059202.6E-184786IPR008422Homeobox KN domain
PROSITE patternPS0002706588IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MRCEDNELKD RLLRKFGSHL SSLKLEFSKK KKKGKLPKEA RQMLLAWWND HYRWPYPTEA  60
DKNSLAESTG LDPKQINNWF INQRKRHWKP SENMQLAVMD NLSGQFFSSD D*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankSTU656481e-131U65648.1 Solanum tuberosum homeodomain protein POTH1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016548951.11e-76PREDICTED: homeobox protein knotted-1-like 6
SwissprotQ84JS61e-52KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A1U8ERC13e-75A0A1U8ERC1_CAPAN; homeobox protein knotted-1-like 6
TrEMBLA0A2G2YEI23e-75A0A2G2YEI2_CAPAN; Homeobox protein knotted-1-like 1
TrEMBLA0A2G3BSE33e-75A0A2G3BSE3_CAPCH; Homeobox protein knotted-1-like 1
STRINGPGSC0003DMT4000350957e-64(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.24e-44KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]