PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g08790
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NF-YC
Protein Properties Length: 183aa    MW: 20971.5 Da    PI: 10.8346
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g08790genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC51.81.8e-16601421697
       NF-YC  16 fknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 
                  ++ +lP++r+kki+k d+d+k++ +ea  l++ + elf+  l+ +s   a e++r+t+k   +  av+r + + +fl+d  p
  CA11g08790  60 SHQLQLPVSRLKKIMKLDQDIKKVNSEALHLIASSTELFLESLAEKSAQVALEKNRKTMKLEHLRVAVKRHQpTSNFLLDSLP 142
                 56789***************************************************************99764789****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.64E-2059146IPR009072Histone-fold
Gene3DG3DSA:1.10.20.105.5E-2160128IPR009072Histone-fold
PfamPF008081.7E-1764127IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
LWTQWPERIK KETPSPPXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXAGES  60
HQLQLPVSRL KKIMKLDQDI KKVNSEALHL IASSTELFLE SLAEKSAQVA LEKNRKTMKL  120
EHLRVAVKRH QPTSNFLLDS LPMPPSQPSD PSPKVQSRRR LSKDKPLPSG TRRIEAFFHN  180
CT*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016546610.13e-86PREDICTED: chromatin accessibility complex protein 1-like
TrEMBLA0A1U8ETB06e-85A0A1U8ETB0_CAPAN; chromatin accessibility complex protein 1-like
STRINGPGSC0003DMT4000748412e-69(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114352425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.11e-33nuclear factor Y, subunit C13