PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g09730
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MIKC_MADS
Protein Properties Length: 167aa    MW: 19233.3 Da    PI: 10.0846
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g09730genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.85.2e-32959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  CA11g09730  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                79***********************************************96 PP
2K-box84.22.8e-28851621087
       K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                  ea + s+qqe+ kLk ++e Lqr+qR+llGedL++L+ k+L++Le+qL+ slk+iRs++++l+l+q+ +lq+k  +l
  CA11g09730  85 REALEISSQQEYLKLKGRYEALQRSQRNLLGEDLGPLNGKDLESLERQLDMSLKQIRSTRTQLMLDQLTDLQRKVPML 162
                 55556689******************************************************************8665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.515161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-34279IPR002100Transcription factor, MADS-box
CDDcd002651.49E-43276No hitNo description
PRINTSPR004043.7E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-333859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.2989166IPR002487Transcription factor, K-box
PfamPF014869.4E-2391162IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0048481Biological Processplant ovule development
GO:0048833Biological Processspecification of floral organ number
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
SSMLKTLERY QKCNYGAPET NISTREALEI SSQQEYLKLK GRYEALQRSQ RNLLGEDLGP  120
LNGKDLESLE RQLDMSLKQI RSTRTQLMLD QLTDLQRKVP MLILMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A1e-3975166194Developmental protein SEPALLATA 3
4ox0_B1e-3975166194Developmental protein SEPALLATA 3
4ox0_C1e-3975166194Developmental protein SEPALLATA 3
4ox0_D1e-3975166194Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00605ChIP-seqTransfer from AT1G24260Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1440140.0GU144014.1 Lycium barbarum SEP3-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001289529.11e-106MADS-box protein 5
RefseqNP_001312089.11e-106agamous-like MADS-box protein AGL9 homolog
RefseqXP_009600809.11e-106PREDICTED: agamous-like MADS-box protein AGL9 homolog
RefseqXP_016438396.11e-106PREDICTED: agamous-like MADS-box protein AGL9 homolog
RefseqXP_016448367.11e-106PREDICTED: agamous-like MADS-box protein AGL9 homolog
RefseqXP_019232853.11e-106PREDICTED: agamous-like MADS-box protein AGL9 homolog
SwissprotQ034891e-107AGL9_PETHY; Agamous-like MADS-box protein AGL9 homolog
TrEMBLA0A2G2YFF81e-108A0A2G2YFF8_CAPAN; Agamous-like MADS-box protein AGL9-like protein
TrEMBLA0A2G3B9491e-108A0A2G3B949_CAPCH; Agamous-like MADS-box protein AGL9-like protein
STRINGXP_009797140.11e-106(Nicotiana sylvestris)
STRINGXP_009600809.11e-106(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.32e-88MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG,Gadella TW,Ferrario S,Busscher M,Angenent GC
    Analysis of MADS box protein-protein interactions in living plant cells.
    Proc. Natl. Acad. Sci. U.S.A., 2002. 99(4): p. 2416-21
    [PMID:11854533]
  2. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  3. Angenent GC,Busscher M,Franken J,Mol JN,van Tunen AJ
    Differential expression of two MADS box genes in wild-type and mutant petunia flowers.
    Plant Cell, 1992. 4(8): p. 983-93
    [PMID:1356537]
  4. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]