PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g09820
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 119aa    MW: 13381.6 Da    PI: 10.2011
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g09820genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.72.6e-174583745
                HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                snr   +s+R++g+lKKA+ELSvLCd+++ + +fs++gk
  CA11g09820 45 SNRIGVYSRRKKGLLKKANELSVLCDIDIFLAMFSPSGK 83
                788899*******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.6613291IPR002100Transcription factor, MADS-box
SMARTSM004325.4E-173290IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.24E-2034115IPR002100Transcription factor, MADS-box
PfamPF003191.8E-154585IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-95368IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-96889IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MTTNHNSVVY IPKSSDVIGI KELNLCLWKC RMGRAKMKLH KLDGSNRIGV YSRRKKGLLK  60
KANELSVLCD IDIFLAMFSP SGKPSLYKSD SSTFEDMITK IAEVNPEERA KRYHSTSI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1837211e-100AY183721.1 Nicotiana tabacum MADS box protein (Mads1;11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016557139.13e-52PREDICTED: agamous-like MADS-box protein AGL30 isoform X2
SwissprotQ7X9I04e-22AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLA0A2G3B9I93e-71A0A2G3B9I9_CAPCH; Uncharacterized protein
STRINGXP_009770375.15e-43(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76402124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.12e-24AGAMOUS-like 65
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]