PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g10090
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NF-YB
Protein Properties Length: 218aa    MW: 24307.2 Da    PI: 6.3611
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g10090genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB176.82.1e-5552147297
       NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                 +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++ lGfedyv plk+ylkkyrelegek
  CA11g10090  52 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITILGFEDYVTPLKQYLKKYRELEGEK 147
                 89*******************************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.5E-5245163IPR009072Histone-fold
SuperFamilySSF471133.11E-3954155IPR009072Histone-fold
PfamPF008084.2E-2857121IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.6E-1985103No hitNo description
PROSITE patternPS00685088104IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.6E-19104122No hitNo description
PRINTSPR006154.6E-19123141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MEDERQGNGQ NVAAIESPES SSNTTIPASS HITTSTLTII SNNVNNNNSS NKEQDRFLPI  60
ANVGRIMKKV IPGNGKISKD AKETVQECVS EFISFVTGEA SDKCQREKRK TINGDDIIWA  120
ITILGFEDYV TPLKQYLKKY RELEGEKLNV PKQQRLEPHQ QHEQKPTFSY SNAYSPTGLV  180
PQALFIPADQ SFPLSFSPNS IQSQLPKQEH VDSMGHW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A2e-4352142797NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-100HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755241e-100HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016552944.11e-160PREDICTED: nuclear transcription factor Y subunit B-3-like
SwissprotQ9SIT99e-68NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLA0A1U8F9N01e-158A0A1U8F9N0_CAPAN; nuclear transcription factor Y subunit B-3-like
STRINGPGSC0003DMT4000431761e-111(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.18e-70nuclear factor Y, subunit B7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]