PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA11g12270

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-YA

Protein Properties

Length: 244aa MW: 27141.5 Da PI: 9.8453

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA11g12270	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	95.7	5.3e-30	111	167	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy+rIl+RRq+Rak+e ekk +ksrkpylheSRh+hAlrR+R+sgGrF CA11g12270 111 QEPVYVNAKQYRRILQRRQSRAKAELEKKQ-IKSRKPYLHESRHQHALRRARASGGRF 167 69**********************9999.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	3.2E-32	109	170	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.166	110	170	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.0E-25	112	167	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	7.0E-23	113	135	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	7.0E-23	144	167	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MSMEKRKCKP CLYYFLSGIA LEDIFSRSDG SYGKVDQNFQ PAAPAIPPRL DGSLAQPQQL 60 ELVGHSIACA PIPYVDPYYG GMMTAFGQPL VPPHVLDMHY ARMPLPQEMA QEPVYVNAKQ 120 YRRILQRRQS RAKAELEKKQ IKSRKPYLHE SRHQHALRRA RASGGRFAKK TDASKGTGSV 180 SSSGSEALQF NAADIQRRHE SGRLADLQHS YSNGSSYGNQ SSFQESKDEY QSAESREGGF 240 PGK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-17	111	167	2	58	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT014146	0.0	BT014146.1 Lycopersicon esculentum clone 133265F, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016547792.1	1e-161	PREDICTED: nuclear transcription factor Y subunit A-1 isoform X1
Swissprot	Q9LXV5	8e-47	NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBL	A0A1U8EKR4	1e-160	A0A1U8EKR4_CAPAN; nuclear transcription factor Y subunit A-1 isoform X1
STRING	PGSC0003DMT400018959	1e-137	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3111	22	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.4	4e-47	nuclear factor Y, subunit A1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Siriwardana CL, et al. NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T. PLoS Genet., 2016. 12(12): p. e1006496 [PMID:27977687] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]