PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g13620
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 171aa    MW: 19043 Da    PI: 9.916
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g13620genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000235072123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                +kC+ C+k+Fs+   L  H  +H
  CA11g13620 50 FKCKTCNKRFSSFQALGGHRASH 72
                89**********99999998887 PP
2zf-C2H211.80.0007392112121
                 EEETTTTEEESSHHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                 +kC++Cg+ Fs+   L  H+r
  CA11g13620  92 HKCSICGMEFSSGQALGGHMR 112
                 79*************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.44E-849114No hitNo description
SMARTSM003550.055072IPR015880Zinc finger, C2H2-like
PfamPF139123.3E-115074IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.2635077IPR007087Zinc finger, C2H2
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
SMARTSM003550.007492114IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.30592119IPR007087Zinc finger, C2H2
PfamPF139127.1E-1292117IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-492117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MNKNILNNMS VMKRKREDYG LVEAEAMANC ALMLSSRSSA SFDGDNLNSF KCKTCNKRFS  60
SFQALGGHRA SHNKRPKLLG DFLIQAKKNM LHKCSICGME FSSGQALGGH MRCHREEINK  120
TVIPVLKKSN SSKRIFGLDL NLTPHDDDDD VDLKLWPTAP ISSPVLRIFI *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0065991e-37AB006599.1 Petunia x hybrida mRNA for ZPT2-12, complete cds.
GenBankAB0066001e-37AB006600.1 Petunia x hybrida mRNA for ZPT2-13, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016546743.11e-124PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD41e-33ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A1U8EHR41e-122A0A1U8EHR4_CAPAN; Uncharacterized protein
TrEMBLA0A2G2YGS31e-122A0A2G2YGS3_CAPAN; zinc finger protein ZAT11-like
TrEMBLA0A2G3AV181e-122A0A2G3AV18_CAPCH; Uncharacterized protein
STRINGPGSC0003DMT4000401432e-78(Solanum tuberosum)
STRINGPGSC0003DMT4000401442e-78(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-29C2H2 family protein