PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g16920
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NF-YB
Protein Properties Length: 162aa    MW: 18665.4 Da    PI: 5.6429
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g16920genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB40.37.4e-1327115588
       NF-YB   5 drflPianvsrimkkvlP...anakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 
                 ++ lP a + r++k  l    +++ is  kd+     e +  fi ++++ a+d c++ kr+ in++d++ al ++ f +++eplk+ l+
  CA11g16920  27 QEGLPKAIIRRLVKDKLSqlsTDSDISllKDSLTAFSESARIFIHYLSATANDICKESKRQIINAEDVFKALEDIEFPEFIEPLKASLE 115
                 556999*******9876511156677655999999**************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.4E-2621115IPR009072Histone-fold
SuperFamilySSF471134.19E-2029115IPR009072Histone-fold
PfamPF008081.4E-83098IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MGEIEKNNKD KEIEKEKAGG TTVQIEQEGL PKAIIRRLVK DKLSQLSTDS DISLLKDSLT  60
AFSESARIFI HYLSATANDI CKESKRQIIN AEDVFKALED IEFPEFIEPL KASLEGQFLF  120
TILKFFENSV FFLMKLNSFH RWLHTYSFHS QMHTITCQLW D*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2170043e-54AC217004.1 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence.
GenBankHG9755233e-54HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016547484.12e-77PREDICTED: DNA polymerase epsilon subunit 3
TrEMBLA0A2G2YH812e-76A0A2G2YH81_CAPAN; Uncharacterized protein
STRINGSolyc11g068480.1.15e-59(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101612427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-36nuclear factor Y, subunit B11