PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g17340
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 155aa    MW: 17926.8 Da    PI: 8.4787
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g17340genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.92.3e-105174326
                S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                ++ C++++rtG+C yG +CkF+H+
  CA11g17340 51 ERKCSHYMRTGQCEYGMTCKFHHP 74
                578********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.8630IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.0661831IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-44875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5444876IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-55076IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-85174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-55473IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MLAIPGYDLQ YCIKTEMCKF GAFCKYYHPR QGEGYPCLVT HNIHEFISEN ERKCSHYMRT  60
GQCEYGMTCK FHHPLPANVQ VSALVVRFFP FLTAEPFSLP VVVPPPTTYL ARQSLSIHLN  120
EQYRMVGQLT SCNTYFDFRL LSSWHICVKT RTRT*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019267356.11e-30PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
RefseqXP_025887306.14e-33zinc finger CCCH domain-containing protein 58
TrEMBLA0A2G2YHE71e-112A0A2G2YHE7_CAPAN; Uncharacterized protein
STRINGSolyc06g054600.2.13e-27(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1598556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.15e-21C3H family protein