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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | CA11g18280 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 157aa MW: 18424.9 Da PI: 8.6856 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 81.9 | 1.1e-25 | 61 | 147 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
kfY +Y ++ GFsvrk++ ++s++++++++r+fvC ke ++++++ k + ++r etr gCka++ ++k++++kw++++l+l+HnHela
CA11g18280 61 KFYLDYTHHNGFSVRKNRITRSRKHKSMIDREFVCAKEEFHSKKSLK---SDKKRDETREGCKAMMYLSKKEEEKWVIARLVLNHNHELA 147
6****************************************999877...89999*********************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 1.5E-23 | 61 | 147 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 157 aa Download sequence Send to blast |
MQDTLESFNL KEQNAKGTEG SLEEIESTVN EIVSFVLQSG DEESREPYIG MKFQSLDVRF 60 KFYLDYTHHN GFSVRKNRIT RSRKHKSMID REFVCAKEEF HSKKSLKSDK KRDETREGCK 120 AMMYLSKKEE EKWVIARLVL NHNHELASPQ SQIFLR* |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019068484.1 | 2e-75 | protein FAR1-RELATED SEQUENCE 5 | ||||
| Refseq | XP_025884722.1 | 2e-75 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| TrEMBL | A0A2G2YHN9 | 1e-108 | A0A2G2YHN9_CAPAN; Uncharacterized protein | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA645 | 8 | 60 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G59470.2 | 7e-20 | FAR1 family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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