PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g18310
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 318aa    MW: 34309.7 Da    PI: 6.6397
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g18310genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00073133155123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C+++F++   L  H  +H
  CA11g18310 133 YECKTCNRTFPSFQALGGHRASH 155
                 99**********99999998887 PP
2zf-C2H213.60.0002218240123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg  Fs+   L  H+r+H
  CA11g18310 218 HECSICGSEFSSGQALGGHMRRH 240
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.03E-9132155No hitNo description
PfamPF139122.9E-13132157IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.658133160IPR007087Zinc finger, C2H2
SMARTSM003550.052133155IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280135155IPR007087Zinc finger, C2H2
SuperFamilySSF576678.03E-9213240No hitNo description
PROSITE profilePS501579.91218245IPR007087Zinc finger, C2H2
SMARTSM003550.02218240IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-11218242IPR007087Zinc finger, C2H2
PROSITE patternPS000280220240IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEVCQNFNDR SCAFRGKRTK RSRPSSPLDT VGTMSITTTS SGGDSDDGGG SEGGGDLCNS  60
TYSPTTSTTQ ILIRGTSEED EDMANCLILL AKSGSGQKVQ AVTDELKKEK ITSRKIAEIT  120
TISTTGKADF YVYECKTCNR TFPSFQALGG HRASHKKPKT IVEDKKSATA TDSTAASHDD  180
QQHHQESDDQ EQGRLNKISH SLSNQTAVIN NISKTKIHEC SICGSEFSSG QALGGHMRRH  240
RPPTTTATTT ATATTKIIST NFETISNVSE SSSSHHDEKS TRNILSLDLN LPAPPEDDHK  300
YEQSIVFSAA PLVDCYY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016546604.10.0PREDICTED: zinc finger protein ZAT5
TrEMBLA0A1U8ERT80.0A0A1U8ERT8_CAPAN; Uncharacterized protein
TrEMBLA0A2G2YHK20.0A0A2G2YHK2_CAPAN; zinc finger protein ZAT5
STRINGSolyc11g066400.1.11e-119(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.13e-45C2H2 family protein