PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g18330
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 393aa    MW: 44579.1 Da    PI: 8.1258
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g18330genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.11.9e-07239261123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C++Cgk F+r  nL+ H+r H
  CA11g18330 239 HYCQICGKGFKRDANLRMHMRAH 261
                 68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.64E-6238263No hitNo description
SMARTSM003550.0028239261IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.9E-6239265IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.632239266IPR007087Zinc finger, C2H2
PROSITE patternPS000280241261IPR007087Zinc finger, C2H2
SMARTSM0035561293326IPR015880Zinc finger, C2H2-like
SMARTSM0035522331353IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MNIQGTTSSN PCFPNSTTNN PQNLPLYESI HHHNIQEDIF SSSLVHNSHQ QNSFLFNLSL  60
LKDKVHQVQS LATMFVSHDD QTLTHHPHES TSVAIANMGT LIQEIITIAS SLMFSCQKIA  120
LDPSSASQNS SIFREPSQMI KIQDDGHGRG DGQMDHLLQD YNWYEENYNY CNTHEDNKNH  180
VTSSIIASNA ISSHDYDSKE FGKREVLLST SKGKVHVNNE DNYDIIELDA SDLLAKYTHY  240
CQICGKGFKR DANLRMHMRA HGDEYKSSAA LSNPLKKNNH DYVSQLIGNK IKYSCPQEGC  300
KWNKKHAKFQ PLKSMVCVKN HYKRSHCPKM YVCKRCNKKQ FSVLSDLRTH EKHCGDLKWQ  360
CSCGTTFSRK DKLMGHVSLF VGHTPLIKES VS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016546716.10.0PREDICTED: zinc finger protein STOP1 homolog
TrEMBLA0A1U8EK000.0A0A1U8EK00_CAPAN; zinc finger protein STOP1 homolog
STRINGSolyc11g066420.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112652225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.13e-89C2H2 family protein