PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g19510
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 613aa    MW: 70046.9 Da    PI: 7.577
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g19510genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.82.2e-1417951098
                HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3 10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                 +k+g + +p  f+ ++ +g   e+++  l  + g++W vk+  ++++    +++GWk+F+k++gL+ gD ++F++dg+++fe v+++f+
  CA11g19510 17 GFKNG-INVPIGFL-KYlKGH--EHIEHALLKRGGKEWLVKV--NGRR----FEDGWKKFAKEHGLQLGDLLIFRHDGDMKFE-VITIFD 95
                56665.88999999.554666..67799**************..8887....9**************************8883.666665 PP
2B352.68.6e-17185272597
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 +++++ l+ + l++pkkfa+e+ +  ++   ++++  + ++W++ +    +++ + +++GW eF+  + LkegD ++F+ ++ +++++ ++++
  CA11g19510 185 TIRPYCLSAHFLCIPKKFAQENRLHDRKC--MMIMRDEQQTWTFSV--YTNGNNTCIGSGWHEFCITKCLKEGDCLMFEIVS-NGETPIFRFH 272
                 5678999999************8876554..666666899******..77778889***********************887.5666777765 PP
3B355.51e-17374460596
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 ++++++l++ +l++pk+fa+e+g++ ++  +++++d + +sW++ +    +++++++++GW eF+  n LkegD ++F+ ++ +++++ +++
  CA11g19510 374 TIRPYSLSKYCLCIPKQFAQENGLNDRKC-MIIVRD-EQQSWTFGV--YTSGKATFIGSGWHEFCITNCLKEGDHLLFEIVS-NGETPIFRF 460
                 56789999999***********9997665.666666.789******..999999*************************887.555566665 PP
4B338.12.7e-12521605795
                 .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 ++++l+   l+lp  fa+++g  +++  +l+l de+ r W+v l   + +++ + +++GW +F  ang+++gD+  F+l++ +++ + v+
  CA11g19510 521 QPYTLRFPVLYLPMAFAKSNGFLNKC--ELILVDEKQRLWSVCL--GRIGNThFGIKRGWPQFRLANGVQVGDTYKFELTN-NDTVPIVH 605
                 5666666679**********655445..7***************..555555499***********************987.55556665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-18396IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-18492IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.378796IPR003340B3 DNA binding domain
CDDcd100176.27E-14895No hitNo description
SMARTSM010195.6E-151097IPR003340B3 DNA binding domain
PfamPF023625.4E-111994IPR003340B3 DNA binding domain
SuperFamilySSF1019367.26E-19175272IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-19178272IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.3E-13181275IPR003340B3 DNA binding domain
PROSITE profilePS5086311.42181274IPR003340B3 DNA binding domain
PfamPF023628.9E-15185272IPR003340B3 DNA binding domain
CDDcd100171.85E-13189272No hitNo description
SuperFamilySSF1019361.35E-19368464IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-19368461IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.21370463IPR003340B3 DNA binding domain
SMARTSM010196.3E-16371464IPR003340B3 DNA binding domain
PfamPF023621.8E-15374461IPR003340B3 DNA binding domain
CDDcd100171.33E-13380461No hitNo description
Gene3DG3DSA:2.40.330.102.3E-16508606IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.92E-17511607IPR015300DNA-binding pseudobarrel domain
CDDcd100171.91E-14514608No hitNo description
PROSITE profilePS5086311.702515609IPR003340B3 DNA binding domain
SMARTSM010193.6E-10516610IPR003340B3 DNA binding domain
PfamPF023625.8E-11521606IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MKIPPRKPHF FKPILPGFKN GINVPIGFLK YLKGHEHIEH ALLKRGGKEW LVKVNGRRFE  60
DGWKKFAKEH GLQLGDLLIF RHDGDMKFEV ITIFDSTHCE REYAEYLRQE EGKDVEEEHE  120
EEEDGEEEED EEEEHEEEAH IVEEISKDFE FKGKPKPKIK TSGKAFSNVE AAKHMNLSHS  180
HFICTIRPYC LSAHFLCIPK KFAQENRLHD RKCMMIMRDE QQTWTFSVYT NGNNTCIGSG  240
WHEFCITKCL KEGDCLMFEI VSNGETPIFR FHGKSLSGPH WCRHSVGVGS VPDLRGSPSL  300
QAEVKKKNLD AERMSDKAIT DDRLKTSDVT TPKSQLTNST GKPRLNIKTS GKALPNVEAG  360
YMDMHLSYSH FICTIRPYSL SKYCLCIPKQ FAQENGLNDR KCMIIVRDEQ QSWTFGVYTS  420
GKATFIGSGW HEFCITNCLK EGDHLLFEIV SNGETPIFRF HGKGSPSLQP EVKKKKLDAE  480
RRPDKAITDV RLKTSDVTTP ESQIAASTSA DANPHFISTV QPYTLRFPVL YLPMAFAKSN  540
GFLNKCELIL VDEKQRLWSV CLGRIGNTHF GIKRGWPQFR LANGVQVGDT YKFELTNNDT  600
VPIVHFHCKY FL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016548710.10.0PREDICTED: B3 domain-containing protein REM6-like isoform X1
TrEMBLA0A1U8EZ960.0A0A1U8EZ96_CAPAN; B3 domain-containing protein REM6-like isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.11e-43B3 family protein