PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA12g00080

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NAC

Protein Properties

Length: 196aa MW: 22952.7 Da PI: 4.2701

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA12g00080	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.2	4.1e-33	4	129	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...k 96 lppGf F+Ptdeelv +yLk k++ + + ++ i+++d +++Pw+L+ ++ ++++wyfFs+ +++ rat++gyWk+ +++++ k + CA12g00080 4 LPPGFSFDPTDEELVLYYLKSKIAPNLHFNFNNIPDLDFSSSHPWELNGMALWSKNQWYFFSQVKEN------IIRATEKGYWKELNMNEPIILKkncG 96 79*******************9998777799**********965556789**98774......689************9998888 PP NAM 97 gelvglkktLvfy.kgrapkgektdWvmheyrl 128 ++ +g+kk +v+y + + p+ ++t+W+m+e++l CA12g00080 97 EKIIGTKKYFVYYiTTNIPEQVQTNWIMEEFHL 129 889******666999**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.54E-40	3	150	IPR003441	NAC domain
PROSITE profile	PS51005	39.402	4	152	IPR003441	NAC domain
Pfam	PF02365	6.2E-23	5	129	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MGDLPPGFSF DPTDEELVLY YLKSKIAPNL HFNFNNIPDL DFSSSHPWEL NGMALWSKNQ 60 WYFFSQVKEN IIRATEKGYW KELNMNEPII LKKNCGEKII GTKKYFVYYI TTNIPEQVQT 120 NWIMEEFHLS NSFKKRKNEK LLEWVVCRVH ESKNNAEGIN CDDDDDDGEV ELSALDEVFL 180 SLDDDQEQDE ISFPY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-25	3	157	16	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-25	3	157	16	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-25	3	157	16	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-25	3	157	16	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-25	3	157	19	173	NAC domain-containing protein 19
3swm_B	2e-25	3	157	19	173	NAC domain-containing protein 19
3swm_C	2e-25	3	157	19	173	NAC domain-containing protein 19
3swm_D	2e-25	3	157	19	173	NAC domain-containing protein 19
3swp_A	2e-25	3	157	19	173	NAC domain-containing protein 19
3swp_B	2e-25	3	157	19	173	NAC domain-containing protein 19
3swp_C	2e-25	3	157	19	173	NAC domain-containing protein 19
3swp_D	2e-25	3	157	19	173	NAC domain-containing protein 19
4dul_A	2e-25	3	157	16	170	NAC domain-containing protein 19
4dul_B	2e-25	3	157	16	170	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	1e-65	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016549754.1	1e-137	PREDICTED: NAC domain-containing protein 104-like isoform X1
Refseq	XP_016549755.1	1e-137	PREDICTED: NAC domain-containing protein 104-like isoform X2
TrEMBL	A0A2G2Y481	1e-139	A0A2G2Y481_CAPAN; Uncharacterized protein
STRING	XP_009625611.1	4e-81	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13785	12	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	5e-38	xylem NAC domain 1