PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA12g00840

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HB-other

Protein Properties

Length: 186aa MW: 21633.8 Da PI: 3.8516

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA12g00840	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	44.6	2.5e-14	28	72	10	54
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 + +e Lee+F k + p + +e+L+ +lgL+ +qVk+WF N+R++ CA12g00840 28 QVIEKLEEMFSKMSDPESDVIEQLSGELGLDITQVKIWFDNKRYQ 72 5689***************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.5E-13	6	70	IPR009057	Homeodomain-like
SMART	SM00389	3.6E-4	17	80	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.34E-10	18	78	IPR009057	Homeodomain-like
CDD	cd00086	4.79E-9	23	72	No hit	No description
Pfam	PF00046	8.5E-12	28	72	IPR001356	Homeobox domain
PROSITE profile	PS50071	11.208	30	76	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MASQDDENVG PNSDQENEKS ICRYSFEQVI EKLEEMFSKM SDPESDVIEQ LSGELGLDIT 60 QVKIWFDNKR YQIQILIAQR DMEEREILRL ENEILHAEIL QIHSELNNRI CANCDNPEQE 120 QILQDMQNEN ENATITDEIT MMFNMIDHIE EIANDYNDDS NSIDLELRLK RNDDPNGPDL 180 ELRLG*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016550008.1	1e-127	PREDICTED: homeobox-leucine zipper protein ROC7-like
TrEMBL	A0A2G2Y4H7	1e-130	A0A2G2Y4H7_CAPAN; Uncharacterized protein
STRING	PGSC0003DMT400030361	2e-43	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15229	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	8e-11	HD-ZIP family protein