PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA12g03010

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 65aa MW: 7381.5 Da PI: 10.3978

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA12g03010	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94.7	4.1e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n++ rqvtfskRr g++KKAeELSvLCda+va+iifss+gkl++yss CA12g03010 9 KKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSNGKLFDYSS 59 78***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.3E-39	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	30.249	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.50E-34	2	60	No hit	No description
SuperFamily	SSF55455	4.32E-29	3	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-28	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.4E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-28	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-28	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 65 aa Download sequence Send to blast
MAREKIQIKK IDNSTARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS NGKLFDYSSS 60 RYSY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6bz1_A	1e-19	1	60	1	60	MEF2 CHIMERA
6bz1_B	1e-19	1	60	1	60	MEF2 CHIMERA
6bz1_C	1e-19	1	60	1	60	MEF2 CHIMERA
6bz1_D	1e-19	1	60	1	60	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ698661	4e-97	JQ698661.1 Capsicum annuum cultivar Maor jointless mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001311589.1	4e-35	MADS-box protein JOINTLESS
Refseq	XP_016549600.1	2e-35	PREDICTED: MADS-box protein JOINTLESS isoform X2
Swissprot	Q9FUY6	1e-34	JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBL	A0A2G2Y597	5e-38	A0A2G2Y597_CAPAN; Uncharacterized protein
STRING	Solyc11g010570.1.1	6e-33	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	1e-34	MIKC_MADS family protein

Publications ? help Back to Top
Nakano T,Kato H,Shima Y,Ito Y Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities. Plant Cell Physiol., 2015. 56(6): p. 1097-106 [PMID:25746985]