PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g03230
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 326aa    MW: 37230.4 Da    PI: 8.0994
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g03230genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.8e-14162213155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++++k+L+
  CA12g03230 162 QRMTHIAVERNRRRQMNDYLAILRSLMPPS---YAQRGDQASIVGGAINFVKELE 213
                 79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.63E-13160217No hitNo description
SuperFamilySSF474593.93E-17161232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.764161212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-13162229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-12162213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-10167218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MALETVVFQQ DPFNYSHKDC TNFYNLENFH DFDHFGFDHG YNWNSPNSSK AQPYHNNNNS  60
SANKFTSSSI AQSYSTNTNT SADRFTSSSI AQSYNTNHNT SADRFTSSSI AQSYNNNNNS  120
SPEACTGLFP MEYFHEESTM VSGRRKRRRT KCAKNKEEIE NQRMTHIAVE RNRRRQMNDY  180
LAILRSLMPP SYAQRGDQAS IVGGAINFVK ELEQLLQFLE GHKQVTTKNQ QHSQCNPFSD  240
FFTFPHHANV KVLSRRRPKQ LLKIVNWLQA MCLTILHLSV TTADHMVLYT FSVKVEDNCQ  300
LNTVSEIASA VHEMVAMIKE EAMSC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144148RKRRR
2144149RKRRRT
3162173RMTHIAVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754506e-63HG975450.1 Solanum pennellii chromosome ch11, complete genome.
GenBankHG9755236e-63HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549672.10.0PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T42e-68BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2G2Y5X00.0A0A2G2Y5X0_CAPAN; Transcription factor bHLH96
STRINGSolyc11g010340.1.11e-118(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]