PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g05890
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NAC
Protein Properties Length: 155aa    MW: 18037.9 Da    PI: 10.1452
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g05890genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.58.6e-1381183127
         NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiyk.vePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgkdkevlskkgel 99 
                 +GfrFhP deel+ +yL++ v +  ++  ++i+ +d+++ +ePw++   v + ek  yf s+ ++ ++ t+k+++r+         g++k+++      
  CA12g05890   8 QGFRFHPIDEELM-KYLNNFVLHGIFPPRDFINVADLFEdSEPWEIM--VGSAEKTRYFLSRLKRLKNsTKKQSQRSD----PIRDGSKKNITI----- 94 
                 7************.9**********999999****998626*****7..66777888999987775441455555542....356666666654..... PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyr 127
                  g k +L + +  ++    ++ +m+ey 
  CA12g05890  95 -GYKSSLKYVNDIEK---DAKLLMKEYL 118
                 .88888888743333...4566777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100512.4676142IPR003441NAC domain
PfamPF023655.7E-108118IPR003441NAC domain
SuperFamilySSF1019413.53E-138140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MPSCKSKQGF RFHPIDEELM KYLNNFVLHG IFPPRDFINV ADLFEDSEPW EIMVGSAEKT  60
RYFLSRLKRL KNSTKKQSQR SDPIRDGSKK NITIGYKSSL KYVNDIEKDA KLLMKEYLLP  120
DHEYKKSSKD KDIYVICKIK EVKKRIKGLD GGRS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549491.11e-109PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A1U8ESY01e-108A0A1U8ESY0_CAPAN; NAC domain-containing protein 78-like
STRINGXP_009604942.13e-31(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-12NAC domain containing protein 2