PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g06300
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 258aa    MW: 29316.9 Da    PI: 9.3002
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g06300genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.11.3e-193986249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +ie k   qvtf kRr g++KKA+EL++LC++e+a+i+fs   k++ +
  CA12g06300 39 KIEVKNHLQVTFLKRRSGLFKKASELCTLCGVEIAIIVFSLARKVFSF 86
                58888899********************************99998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.1193090IPR002100Transcription factor, MADS-box
SMARTSM004327.3E-273089IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-2430104IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-153252IPR002100Transcription factor, MADS-box
PfamPF003193.4E-213986IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-155267IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-156788IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MSIQNHKNIL SLILFLQLIL SNMAKKPSSM GHQKIKIAKI EVKNHLQVTF LKRRSGLFKK  60
ASELCTLCGV EIAIIVFSLA RKVFSFGHPN VESLIDRFLS RNNTNNNPIA NNSLQLVEAH  120
RNANVCGLNL QLTQILGEVE IEKKRGESLD QMRKTSQSQC WWEAPTSQLD LQELEQLKDS  180
MEALKKYVTN QASKFMVNEI SNSSTFFGDN GNGIFDNYDI KPPRTIAFVL IQLHFFNSFF  240
LCLSPSLFLD FHLESRH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2402040.0AC240204.1 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-33m2 map 1, complete sequence.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016581987.11e-129PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK27e-56AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A2G2Y5N70.0A0A2G2Y5N7_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000948161e-114(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-50AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]