PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g06340
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 51aa    MW: 5713.08 Da    PI: 11.4082
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g06340genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.14.6e-131746231
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLC 31
                +ie k   qvtfskRr g+lKKA EL++L 
  CA12g06340 17 KIEVKNHLQVTFSKRRYGLLKKAIELCTLS 46
                68889999********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.147845IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-7847IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-14846IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-101030IPR002100Transcription factor, MADS-box
PfamPF003194.3E-111745IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-103045IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 51 aa     Download sequence    Send to blast
MAKKPSSMGR KKIKIAKIEV KNHLQVTFSK RRYGLLKKAI ELCTLSVVLK *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019234247.11e-18PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2G2WVQ42e-19A0A2G2WVQ4_CAPAN; Agamous-like MADS-box protein AGL62
TrEMBLA0A2G2Y6A75e-19A0A2G2Y6A7_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000948164e-17(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1925233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.13e-13M-type_MADS family protein