PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g06370
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 224aa    MW: 25167.7 Da    PI: 9.3074
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g06370genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.84.3e-211765250
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                +ie k   qvtfskRr g++KKA+EL++LC +e+a+i+fs+  k++ +s
  CA12g06370 17 KIEVKNHLQVTFSKRRSGLFKKASELCTLCCVEIAIIVFSPARKVFSFS 65
                58888899*************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.01E-26882IPR002100Transcription factor, MADS-box
SMARTSM004327.7E-30867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.969868IPR002100Transcription factor, MADS-box
CDDcd002652.47E-31977No hitNo description
PRINTSPR004042.1E-171030IPR002100Transcription factor, MADS-box
PfamPF003195.4E-221764IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-173045IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-174566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MAKKPSSMGR QKIKIAKIEV KNHLQVTFSK RRSGLFKKAS ELCTLCCVEI AIIVFSPARK  60
VFSFSHPNVE SLIDRFRSRN NTNNNPIANN SLQLVEAHRN ANVCGLNLQL TQILGEVEIE  120
KKRGESLDQM RKTSQSQCWW EAPISQLDLQ ELEQLKDSME ALKKYVTNQA SKFMVNEIAN  180
SSTFFGDNGN GIFDNYDIKP PRTMPSSSDL HNHSLGFDSA ALF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2402040.0AC240204.1 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-33m2 map 1, complete sequence.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016581987.11e-140PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK29e-58AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A2G2Y6A71e-165A0A2G2Y6A7_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000948161e-129(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-52AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]