PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g09140
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 105aa    MW: 12504.2 Da    PI: 10.204
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g09140genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.94.3e-332785159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  CA12g09140 27 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 85
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-341285IPR003657WRKY domain
SuperFamilySSF1182902.09E-291986IPR003657WRKY domain
PROSITE profilePS5081129.3562287IPR003657WRKY domain
SMARTSM007749.8E-372786IPR003657WRKY domain
PfamPF031066.0E-262884IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MKKIKSSRRK VREPRFCFKT MSDVDVLDDG YKWRKYGQKV VKNTQHPRSY YRCTQDNCRV  60
KKRVERLAED PRMVITTYEG RHVHSPSHDE EDSQASSQLN NLLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-281884874Probable WRKY transcription factor 4
2lex_A3e-281884874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-70HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549676.16e-73PREDICTED: probable WRKY transcription factor 13
SwissprotQ9SVB74e-55WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A1U8ETH11e-71A0A1U8ETH1_CAPAN; Putative WRKY transcription factor 13
TrEMBLA0A2G2VG181e-71A0A2G2VG18_CAPBA; Putative WRKY transcription factor 13
TrEMBLA0A2G2Y7B61e-71A0A2G2Y7B6_CAPAN; probable WRKY transcription factor 13
TrEMBLA0A2G3B2M31e-71A0A2G3B2M3_CAPCH; Putative WRKY transcription factor 13
STRINGSolyc04g051540.2.12e-71(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103762126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.12e-57WRKY DNA-binding protein 13