PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA12g09290

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

WRKY

Protein Properties

Length: 65aa MW: 7595.4 Da PI: 7.1399

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA12g09290	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	53.3	5.4e-17	5	42	22	59
EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 r+YY+C+ gC+vkk+ver++ed ++v++tYeg Hnhe CA12g09290 5 RNYYKCSNGGCNVKKRVERDNEDSSYVITTYEGIHNHE 42 99***********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00774	2.4E-8	3	43	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-14	4	44	IPR003657	WRKY domain
Pfam	PF03106	1.7E-12	5	42	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	4.8E-16	5	44	IPR003657	WRKY domain
PROSITE profile	PS50811	17.81	5	44	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 65 aa Download sequence Send to blast
MYEFRNYYKC SNGGCNVKKR VERDNEDSSY VITTYEGIHN HESPHVIHYT QFPPNNIALH 60 NLHL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016549694.1	7e-38	PREDICTED: probable WRKY transcription factor 50 isoform X1
Refseq	XP_016549695.1	8e-38	PREDICTED: probable WRKY transcription factor 50 isoform X2
Swissprot	Q93WU9	2e-17	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A1U8F0L3	2e-36	A0A1U8F0L3_CAPAN; probable WRKY transcription factor 50 isoform X1
TrEMBL	A0A1U8F224	2e-36	A0A1U8F224_CAPAN; probable WRKY transcription factor 50 isoform X2
TrEMBL	A0A2G2Y7D8	2e-36	A0A2G2Y7D8_CAPAN; Putative WRKY transcription factor 56
STRING	Solyc04g051690.2.1	6e-36	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2124	24	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	9e-20	WRKY DNA-binding protein 51

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]