PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g09670
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 520aa    MW: 58139.6 Da    PI: 8.978
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g09670genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.8e-12417465255
                 HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 r +h e+Er+RR+++N+ f+ Lr ++P+ +      K +K++ L  A+ +I ++q
  CA12g09670 417 RLNHAEVERQRRAKLNQQFNALRAVVPNiS------KKDKVSLLGGAIAHITDMQ 465
                 889*************************66......99*************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.5E-2045153IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142157.9E-11159198IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000839.73E-10414469No hitNo description
SuperFamilySSF474593.01E-16415487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.659415464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-16417478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-9417465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11421470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MTMLWSDEDK TMVEAILGIK AYDYLMSSIV STEISLMSMG SNENLQNMLS DLVERPNGSN  60
FSWNYSIFWQ ISQSKLGELV LGWGDGCCRE AREGEESEVT RILNLRLEDE AQQRMRKRVL  120
RKLHMFFGGS DKENSVFGLD RVTDTEMFLL ASRGNVLVLS AGMQTIVLIP TDIGVVELGS  180
IRPIPESLEL VQSIKSCFSL ILSLVRAKQA TFATVVAEKN NGNNSTFSSS FLQEQSNGNP  240
KIFGQNLNSG CTQFRQNLAV RKAADRQVET YRNGNRVPFM NAQSGVRPVS WASFGNVKPV  300
NSAELYSPKA PANNLRNFAV NGGREEFRIN NLQHQKPGGT QIDFSNSRPV VSPVHTVESE  360
HPDVEVSCKE NYAGPADETR PRKHGREPAS GREEALDQAE AERQRRQKLN PSGREERLNH  420
AEVERQRRAK LNQQFNALRA VVPNISKKDK VSLLGGAIAH ITDMQKKIRD MEDERARLGG  480
PNSETQSRVA DINIEAASEK SSKCPKRHRS MLLRQNFLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-19413490279Transcription factor MYC2
5gnj_B2e-19413490279Transcription factor MYC2
5gnj_E2e-19413490279Transcription factor MYC2
5gnj_F2e-19413490279Transcription factor MYC2
5gnj_G2e-19413490279Transcription factor MYC2
5gnj_I2e-19413490279Transcription factor MYC2
5gnj_M2e-19413490279Transcription factor MYC2
5gnj_N2e-19413490279Transcription factor MYC2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554600.10.0PREDICTED: transcription factor bHLH13-like isoform X1
SwissprotA0A3Q7HES40.0MTB2_SOLLC; Transcription factor MTB2
TrEMBLA0A2G2Y7Z30.0A0A2G2Y7Z3_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000180460.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35852348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-117bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]