PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g10930
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 193aa    MW: 21210.7 Da    PI: 4.5687
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g10930genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-1953102255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr++  +g+WvAeIr+p   + r +r++lg+f t  eAa+a++ a+++l+g
  CA12g10930  53 TYRGVRQRT-WGKWVAEIREP---N-RgARIWLGTFNTSLEAARAYDDAARRLYG 102
                 69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.58E-1952112No hitNo description
SMARTSM003801.2E-3453116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-3053111IPR001471AP2/ERF domain
PROSITE profilePS5103221.87853110IPR001471AP2/ERF domain
PfamPF008471.3E-1353102IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2153110IPR016177DNA-binding domain
PRINTSPR003672.3E-105465IPR001471AP2/ERF domain
PRINTSPR003672.3E-107692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MAESVESVSV CIPIVEEPKS DTNNSPTVKK STVGRSRKGC MRGKGGPENA LCTYRGVRQR  60
TWGKWVAEIR EPNRGARIWL GTFNTSLEAA RAYDDAARRL YGADAKLNLS ESSEESPLTD  120
KEFISRPETC MENIIEGGEC SVLEEASIFK DGNGEYLVWE TPVPSLMGEQ DHNIMMSGLD  180
FPGDNTGLNW IN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1754109359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016574802.11e-141PREDICTED: dehydration-responsive element-binding protein 2C-like
TrEMBLA0A1U8GU741e-139A0A1U8GU74_CAPAN; Dehydration-responsive element-binding protein 2D
TrEMBLA0A2G2Y7M71e-139A0A2G2Y7M7_CAPAN; dehydration-responsive element-binding protein 2C-like
STRINGXP_009630729.13e-65(Nicotiana tomentosiformis)
STRINGPGSC0003DMT4000738534e-66(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.19e-35ERF family protein