PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g11870
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 260aa    MW: 28402 Da    PI: 5.3649
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g11870genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.3e-13246347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT+eE+ l++ + ++lG+g+W+ I+r + + Rt+ q+ s+ qky
       CA12g11870  2 PWTEEEHRLFLIGLQKLGKGDWRGISRNFVTSRTPTQVASHAQKY 46
                     8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015573.5E-17150IPR006447Myb domain, plants
SMARTSM007171.2E-6149IPR001005SANT/Myb domain
PROSITE profilePS5129420.864151IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-11245IPR009057Homeodomain-like
SuperFamilySSF466893.36E-16252IPR009057Homeodomain-like
PfamPF002491.2E-10246IPR001005SANT/Myb domain
CDDcd001673.51E-9247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
VPWTEEEHRL FLIGLQKLGK GDWRGISRNF VTSRTPTQVA SHAQKYFIRQ SSATRRKRRS  60
SLFDIVADTA ADASHPLPDE QFMLPPRAME SDKEQLAPSA TKAIETDFAD SLPSLDLSLK  120
SDFESMETVP SEPVQETKPN TATSEIPPAF PAFFPAYIPV PYPFWPSNAI PVPEDRGPEP  180
SHHQILKPIP TVPKEPVNVD ELVGMSQLTL ADAGSGHFEP SPLSLKLTAE PSRQSAFHAS  240
TPGKSSEITK GETAPIQAL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016550922.10.0PREDICTED: uncharacterized protein LOC107850716
TrEMBLA0A1U8EUM60.0A0A1U8EUM6_CAPAN; uncharacterized protein LOC107850716
STRINGSolyc12g044610.1.11e-174(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117701922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.14e-49MYB_related family protein