PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g12200
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 280aa    MW: 32123.8 Da    PI: 6.0658
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g12200genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08166206954
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  CA12g12200 166 ARLRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 206
                 699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-14162225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-12162220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-12163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.27E-10163211No hitNo description
PfamPF000108.5E-6167206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDINHINLTT STWEPTMSNM ENHVFHDQQQ QRPCLSSIPN DHVFHDHHQQ QQQQQQFHFE  60
QNPIWPSFPL QNPHHHQLPS SSNQLQQQQQ QQQVPFDHVQ TLIEDPNDHE PHEDEDEDEE  120
EEELGAMKEM MFKIAAMQPV DIDPATIRKP KRRNVRISND PQSVAARLRR ERISEKIRIL  180
QRLVPGGTKM DTASMLDEAI RYVKFLKRQI RLLQSSNHHL PPAQVLVPPC PNNENWANIV  240
TTTKALILGS SSTTTTVANN ATTFVGNTSS DPTYEVIGN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166171RLRRER
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549963.10.0PREDICTED: transcription factor HEC3-like
TrEMBLA0A1U8ES290.0A0A1U8ES29_CAPAN; transcription factor HEC3-like
STRINGXP_009783821.11e-120(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.14e-46bHLH family protein