PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g12580
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARF
Protein Properties Length: 832aa    MW: 92681.6 Da    PI: 6.6486
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g12580genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3711.6e-22132233199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++ ++W +++i+r++++r++l++GW+ Fv++++L +gD ++F   + +++el+
  CA12g12580 132 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHTNEWCFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGELR 227
                 99*****************************7333.34459************************************************..449999** PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 v+v+r+
  CA12g12580 228 VGVRRA 233
                 ***996 PP
2Auxin_resp119.23.3e-39258340183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++tk++F+v+Y+Pr+s++eF+v++++++++lk+++s+GmRfkm+fe+e+++e+r++Gt++g+++++p +Wp+SkWr+Lk
  CA12g12580 258 AWHAIQTKTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYSIGMRFKMRFEGEEAPEQRFTGTIIGIEKAEPKSWPESKWRCLK 340
                 89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.3E-40128247IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-39128261IPR015300DNA-binding pseudobarrel domain
CDDcd100174.43E-20130232No hitNo description
SMARTSM010197.0E-22132234IPR003340B3 DNA binding domain
PfamPF023622.4E-20132233IPR003340B3 DNA binding domain
PROSITE profilePS5086310.941132234IPR003340B3 DNA binding domain
PfamPF065073.0E-36258340IPR010525Auxin response factor
PfamPF023091.1E-10703792IPR033389AUX/IAA domain
SuperFamilySSF542773.09E-11704782No hitNo description
PROSITE profilePS5174523.555705789IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    Send to blast
MCSEMATSDS GRSATGAGKV DAEKALYAEL WRACAGPLVT VPRERELVFY FPQGHIEQVE  60
ASTNQASDQQ MPVYNLPSKI LCRVMNVLLK AETDTDEVYA QVTLMPEPNQ DENAVMKEPM  120
PSPPPRFHVH SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMSRQPPTQ ELVAKDLHTN  180
EWCFRHIFRG QPRRHLLQSG WSVFVSSKRL VAGDAFIFLR GENGELRVGV RRAMRQQGNS  240
PSSVISSHSM HLGVLATAWH AIQTKTMFTV YYKPRTSPAE FIVPYDQYME SLKNNYSIGM  300
RFKMRFEGEE APEQRFTGTI IGIEKAEPKS WPESKWRCLK VRWDDTTAIP RPDRVSPWKV  360
EPALSPPALN PLPIPRQKRP RSNVLPSSPD SSVLTREGSS KVTVDPSQAS GFSRVLQGQE  420
ISTLRGNFVE NNESDSSEKP IVWPPLLDDE KADSASRICL SDKWLPLGRP ESSFTDLLSG  480
FGVQANSSHG FLLPTGGHTT SSSLVKQQTL DKESDFSLMG KQWSLVSSGL SLNLMDSRLK  540
GVDTLCQMGG TSRCNGFNEH PALPGHRIDN HQGNWLTPQS ALPYIQMSIH SREMMPKPIT  600
SLQPEAMKSK EGNCKLFGIP LVSKSASIDP VMLQKNSPTD SASNMHFGVH PHQFPVTESD  660
QRSAQLTGSK LLDDGIALND QEEQFQISHP GTRDREGRGL VNSTRSCTKV HKQGMALGRS  720
VDLAKFNNYE ELIAELDHLF DFNGELKSRN KNWLVIYTDH EGDMMLVGDD PWQEFCGMVR  780
KIFIYTKDEV QQMNPGTLNS KGEDNSSVAE GYDAKAVKNL QLPYDSSPED S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-17053621354Auxin response factor 1
4ldw_A1e-17053621354Auxin response factor 1
4ldw_B1e-17053621354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor. Involved in the control of fruit ripening process. Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26716451, PubMed:26959229). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). {ECO:0000255|RuleBase:RU004561, ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By tomato fruit ripening. Expression is up-regulated by plant hormone auxin in tomato fruits. {ECO:0000269|PubMed:26716451}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1439400.0HM143940.1 Solanum lycopersicum auxin response factor 11-like (ARF11) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016550709.10.0PREDICTED: auxin response factor 2-like isoform X1
SwissprotK4DF010.0ARF2B_SOLLC; Auxin response factor 2B
TrEMBLA0A2G2Y8950.0A0A2G2Y895_CAPAN; Auxin response factor
STRINGPGSC0003DMT4000374540.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26182444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Breitel DA, et al.
    AUXIN RESPONSE FACTOR 2 Intersects Hormonal Signals in the Regulation of Tomato Fruit Ripening.
    PLoS Genet., 2016. 12(3): p. e1005903
    [PMID:26959229]