PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g15600
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 227aa    MW: 24600.7 Da    PI: 4.6111
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g15600genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.66e-08179207129
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar 29 
                      r++W+t Ed  l+ av++ G g+W+ I +
       CA12g15600 179 RKPWSTAEDMELIAAVQKCGEGNWANILK 207
                      799***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.701174226IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.3E-11174220IPR009057Homeodomain-like
SuperFamilySSF466891.15E-9175221IPR009057Homeodomain-like
PfamPF002493.2E-6179207IPR001005SANT/Myb domain
CDDcd116605.48E-12180221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
YPATTVLGML QEVGQVADEK IDWDALVRKS TTGITNAREY QMLWRHLAYR HVLLDKLEDW  60
AEPLDDDSDL EYELEAFPAV SSEASAEAAA CVKVLIASGV PNDANMLNGS TVEAPLTINI  120
PNGQTSRTGM DNSFQGTSMH GTNITVPVAV QKQPLSTMAA EGLDTHGPAC TNVHPRRKRK  180
PWSTAEDMEL IAAVQKCGEG NWANILKGDF KGDRTASQLS QVFLCI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174180PRRKRKP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0142000.0BT014200.1 Lycopersicon esculentum clone 133377F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016550441.11e-164PREDICTED: uncharacterized protein LOC107850435
TrEMBLA0A1U8EVM21e-162A0A1U8EVM2_CAPAN; uncharacterized protein LOC107850435
TrEMBLA0A2G2Y9C91e-162A0A2G2Y9C9_CAPAN; Uncharacterized protein
STRINGSolyc12g087970.1.11e-133(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34342237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.12e-57MYB_related family protein