PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA12g15610

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 348aa MW: 39576.5 Da PI: 4.8363

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA12g15610	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.1	6.4e-08	182	224	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N +++ Lr+++Pk + + +iL ++eY k+L CA12g15610 182 MAERRRRKRLNGRLSMLRSIVPKiS------NMYRTSILADTIEYTKEL 224 79*********************66......466666888888886665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.563	175	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-12	179	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.0E-6	181	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-12	182	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-5	182	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MENYSENGFL LDELLAFRSD LWETYFPTEK NSNINFYCNS SYDYFGENPY PIPLFPSTTH 60 SNITTTSFED YHNNFSIDQS QNYSLLSDFY STQLVHEFSP VELTDSSNNW LDTPTPTFTS 120 QLQDFSSILD NLEVGHFACK LERTQSTEST TIAPIFNIGN SLCPEKKAKT KKANGEPSKN 180 LMAERRRRKR LNGRLSMLRS IVPKISNMYR TSILADTIEY TKELIEKINN LQQEMELGPN 240 QLSLMSIFKN EKPIEMFLRN SPKFNVERRN MDTIVEINCA GKSSLLLSTL AALDSSGLEP 300 QQCVISCFND FAMHASCSEE MDQRGLANPE EIKQALFRNA GYAGKCL*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MENYSENGFL LDELLAFRSD LWETYFPTEK NSNINFYCNS SYDYFGENPY PIPLFPSTTH  60
SNITTTSFED YHNNFSIDQS QNYSLLSDFY STQLVHEFSP VELTDSSNNW LDTPTPTFTS  120
QLQDFSSILD NLEVGHFACK LERTQSTEST TIAPIFNIGN SLCPEKKAKT KKANGEPSKN  180
LMAERRRRKR LNGRLSMLRS IVPKISNMYR TSILADTIEY TKELIEKINN LQQEMELGPN  240
QLSLMSIFKN EKPIEMFLRN SPKFNVERRN MDTIVEINCA GKSSLLLSTL AALDSSGLEP  300
QQCVISCFND FAMHASCSEE MDQRGLANPE EIKQALFRNA GYAGKCL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	183	190	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975524	1e-42	HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016549828.1	0.0	PREDICTED: transcription factor bHLH61-like
Swissprot	Q9LSL1	8e-61	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A1U8ERP3	0.0	A0A1U8ERP3_CAPAN; transcription factor bHLH61-like
STRING	XP_009619169.1	1e-144	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA789	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	2e-57	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]