PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g16720
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 259aa    MW: 29003.1 Da    PI: 10.2995
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g16720genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.2e-08173213954
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  CA12g16720 173 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIHYMKFL 213
                 699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.027164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-13169222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-13170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.65E-10170218No hitNo description
SuperFamilySSF474595.23E-14170222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-6174213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048462Biological Processcarpel formation
GO:2000012Biological Processregulation of auxin polar transport
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEMMLLMQME NEMPMLDYSP QRNIINNSNN NNNNNNNIDR NNFSEIFDHH NPPSTLFLNN  60
MSSTISLNGC KSPQIVHQDS SITLPFLDNS SSTSGTNGRL RSSIRAANKE QVSSASHLTF  120
PSSHTVKRNS MAAMREMIFR IAAMQPIQID PASVKAPKRR NVKISSDPQS VAARHRRERI  180
SEKIRILQRL VPGGTKMDTA SMLDEAIHYM KFLKKQVQSL EKVEVNRPIV AATSGCLGFP  240
VPMSLSGNYY PYHQSVQP*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754517e-99HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549968.10.0PREDICTED: transcription factor HEC1-like
TrEMBLA0A1U8ES350.0A0A1U8ES35_CAPAN; transcription factor HEC1-like
STRINGXP_009766851.12e-81(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.16e-45bHLH family protein