PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g19130
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 321aa    MW: 35173.5 Da    PI: 9.3059
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g19130genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.54.3e-26240298259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D+++WrK GqK +kgs++p +YY+Cts  gCp+kk+ver+ +dp+++++tYe+eH h+
  CA12g19130 240 TDECSWRKCGQKLIKGSPYPWAYYKCTSFpGCPAKKHVERAMDDPTMLIVTYEEEHCHT 298
                 699************************877***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-27231299IPR003657WRKY domain
PROSITE profilePS5081124.065234297IPR003657WRKY domain
SuperFamilySSF1182907.06E-23238298IPR003657WRKY domain
SMARTSM007746.2E-29239299IPR003657WRKY domain
PfamPF031066.0E-23241297IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MNKELALQEA ASTGLKIMEH LIKLTTNESV VQVDYHEITD FAVAKLKKAN AMVGRTGHAR  60
FRRGPVQVQA QNKAESQAQV QNSLTSLSLS PYGYMEKERV LASMTLSVVA SVAAPVQTEL  120
TLGFKMPIVN DDVGGAGVGN MKWKDDFGGM KNWINSSSFL SFITGEGSES IVNVVPPPSS  180
SMLLLPIAQV VSAEKQSSAT GKRCREQEQS GDGSGKKRKV FPRKVIRTPM ISSKITAIPT  240
DECSWRKCGQ KLIKGSPYPW AYYKCTSFPG CPAKKHVERA MDDPTMLIVT YEEEHCHTQV  300
AIQEYNSLMM AFGSVKEKKE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-182382971371WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549066.10.0PREDICTED: probable WRKY transcription factor 11
TrEMBLA0A2G2YAM20.0A0A2G2YAM2_CAPAN; Uncharacterized protein
STRINGSolyc12g096350.1.12e-86(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31452250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.21e-62WRKY DNA-binding protein 11