PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g20080
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 458aa    MW: 51193.2 Da    PI: 10.0412
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g20080genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.5e-075590340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                     +W+ e+   +++a +++G++ Wk++a  +   Rt++++
       CA12g20080 55 KWSDEDLTHFYQAYRKYGKD-WKKVAGAVK-PRTAEMV 90
                     8*****************99.******999.8998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.64E-95199IPR009057Homeodomain-like
CDDcd001672.11E-45590No hitNo description
Gene3DG3DSA:1.10.10.609.0E-45591IPR009057Homeodomain-like
PfamPF002499.4E-65590IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MFSRILGMAP TKKSRSVNKR FSPTTEISPS KDGISDNLKK SSQRKRKLSD MLGPKWSDED  60
LTHFYQAYRK YGKDWKKVAG AVKPRTAEMV EALYTMNRAY LSLPEGTASV VGLIAMMTDH  120
YCNLAASDSD QESNEDAGTS RKPQKRARVK VQPNVSKTSE VASPTLAATH GCLTLLKKKR  180
SGGARPRAVG KRTPRFPVSF SNENPMGEEY FSPSRRSLKL QADDTDDDVK IALVLTEASQ  240
RGGSPQVSQT LNRWTDSAMS SPLETAERKR VKMSMGDRKL LSNEVDEEEG SMEADTGELL  300
RYKDDLADTG TISRAAQKGR RPYSEKLEVD SGDNHFDDIK EACSGTEEGQ RLGVVRGKLE  360
MEASDEKNSR TSLQAPRKRS KKMFFRRGIT KFYKITEFWK KCFVDYCSSE LSIPVVLAAF  420
YMFFLALFDY SILSLAISLK GGKGIYSWKL QKSQLPN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016551194.10.0PREDICTED: protein ALWAYS EARLY 3-like isoform X1
TrEMBLA0A1U8F4X50.0A0A1U8F4X5_CAPAN; Uncharacterized protein
TrEMBLA0A2G2YBA70.0A0A2G2YBA7_CAPAN; protein ALWAYS EARLY 3-like isoform X1
STRINGSolyc12g098160.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33122333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.21e-76DNA binding