PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g20410
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 296aa    MW: 33056.9 Da    PI: 6.2896
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g20410genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-08214261455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ah+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  CA12g20410 214 AHSLAERVRREKIGERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 261
                 8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.07E-9208265No hitNo description
SuperFamilySSF474598.37E-17208279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16210278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.25210260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-5214261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-8216266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MNNVNTMNEL NCSTSFYQND PFESNIIVSS NTNNFSDNFV LSEVIGKLGS ICNSGEISPN  60
SFVDSNNNSC YTTPMSSPPR LNLANFPSYF ASNNLESCKL SRISRNMCIK ENEFGDSREN  120
SSVCEQIPIE EIGIKCQNDA NSMKGKSIPK RKAKEIIAKN ENVSTQNNES SSKRIKCDEK  180
IGSDKEQNEE NQKPQEPSKD YIHVRARRGQ ATDAHSLAER VRREKIGERM KFLQDLVPGC  240
NKVTGKAVML DEIINYVQSL QCQVEFLSMK LSNMNPTMDF NAESVTSKNV SHTNS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148154PKRKAKE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754518e-53HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549658.10.0PREDICTED: transcription factor bHLH62-like
SwissprotQ9SRT24e-59BH062_ARATH; Transcription factor bHLH62
TrEMBLA0A1U8ER800.0A0A1U8ER80_CAPAN; Transcription factor bHLH49
TrEMBLA0A2G2YAY40.0A0A2G2YAY4_CAPAN; transcription factor bHLH62-like
TrEMBLA0A2G3B5110.0A0A2G3B511_CAPCH; Transcription factor bHLH49
STRINGPGSC0003DMT4000116511e-137(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-57bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]