PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g21330
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GATA
Protein Properties Length: 153aa    MW: 16549.8 Da    PI: 10.6583
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g21330genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.7e-192054135
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                C+ CgttkTplWR gp g+k+LCnaCG++ rkk++
  CA12g21330 20 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 54
                ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.5E-141464IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.7161450IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-131754No hitNo description
Gene3DG3DSA:3.30.50.101.4E-151854IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.32E-121954No hitNo description
PfamPF003204.0E-172054IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402045IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MSGQSKTPER VSLETSQKTC ADCGTTKTPL WRGGPAGPKS LCNACGIRSR KKRRALLGLN  60
KEDKKAKKSS NKSIDNHPRH HQNQSSNSSS TSSSGESTTS KAVVEMNECI PFKKRALHFG  120
RPKLNSTHTR KLSEEEQAAF LLMALSCGSV YA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016551662.11e-109PREDICTED: GATA transcription factor 17-like
RefseqXP_016551663.11e-109PREDICTED: GATA transcription factor 17-like
SwissprotQ9LIB55e-30GAT17_ARATH; GATA transcription factor 17
TrEMBLA0A1U8EWY11e-108A0A1U8EWY1_CAPAN; GATA transcription factor 23
TrEMBLA0A2G2YB931e-108A0A2G2YB93_CAPAN; GATA transcription factor 17-like
STRINGSolyc12g099370.1.12e-62(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16870.14e-26GATA transcription factor 17
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]