PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g21340
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARR-B
Protein Properties Length: 562aa    MW: 63140.7 Da    PI: 6.4603
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g21340genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.94.2e-27189242155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 k+r+ W+peLHe+F++a++qLGG +kA+P++il+lm+v+gL +ehv+SHLQkYRl
  CA12g21340 189 KARVLWSPELHEKFIQAINQLGG-DKAVPQKILKLMNVPGLEREHVASHLQKYRL 242
                 689******************66.78****************************8 PP
2Response_reg79.98.3e-27221301109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   +l+vdD+p+ +++l+ +l+k +y ev++++++e al ll+e++  ++l++ D+ mp+mdG++l++ i  e  +lp+i+++  ++ + + +a+  Ga+
    CA12g21340  22 LLVVDDDPSCLRVLECMLKKCHY-EVTTCEHAEVALSLLRENRnnFHLVISDVHMPDMDGFKLVELIVLEM-NLPVIMMSVDDSRSVIMKAVIHGAH 116
                   599********************.***************999889**********************8865.9************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l+Kp+++e+l +
    CA12g21340 117 DYLVKPVSIEALKN 130
                   **********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.71E-3319138IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.0E-3820175No hitNo description
SMARTSM004482.3E-2920132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.47521136IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.9E-2323130IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.13E-2623135No hitNo description
PROSITE profilePS5129412.638186245IPR017930Myb domain
SuperFamilySSF466892.69E-18186246IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-28188246IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-23189243IPR006447Myb domain, plants
PfamPF002491.8E-8193241IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MATSGECLNS GGFSGEFPTF RLLVVDDDPS CLRVLECMLK KCHYEVTTCE HAEVALSLLR  60
ENRNNFHLVI SDVHMPDMDG FKLVELIVLE MNLPVIMMSV DDSRSVIMKA VIHGAHDYLV  120
KPVSIEALKN IWQHVVRQNK DEWKGKILDR LGNVEGAESK EGRLKSSKKR NDEEENEIGE  180
RNDTNTVKKA RVLWSPELHE KFIQAINQLG GDKAVPQKIL KLMNVPGLER EHVASHLQKY  240
RLQLQKNRSG LESGFMGHSE VTIGTLLNNL DVQTLAPMDQ HPVQNLTTHQ GPTWVRPKSP  300
IFIKEPTWGS PTTKSPIFMQ RNHLSFQNPV LRYQGPQQMN NSNKQVNLPC GIPTTEQFLR  360
MNIPVARISQ PQLRVQNMLS ESNKILSQNG IVDDTRDSMY NQVPRTAVDF SLNQNIPLAG  420
TNFLLSANST VSATTEQVNV GYDNFSKLCQ QKAQDWGLQN VVGSTFDASM EQNGQNLNAP  480
IAEAVFSSRQ EIGHVNLIDG PKVNSVRAAE RYTDSSYQST IFLEPFEQDN DLMSALLEQV  540
SLNLLSLPRF NISSYVSYFN I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-17188246462ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549030.10.0PREDICTED: two-component response regulator ARR2
TrEMBLA0A1U8F0710.0A0A1U8F071_CAPAN; Two-component response regulator
STRINGPGSC0003DMT4000907470.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14508910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-103response regulator 2