PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA12g22120

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HB-other

Protein Properties

Length: 541aa MW: 61578 Da PI: 9.5855

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA12g22120	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55	1.4e-17	54	109	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r+R t+ q e Le+++++++yp+++++ e A++lgLte+qV+ WF+ rR k+k+ CA12g22120 54 RPRIIKTRAQREGLEKFYKEHKYPTESMKLEVAHSLGLTEKQVSGWFCHRRLKDKR 109 8999**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.5E-20	38	109	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.888	50	110	IPR001356	Homeobox domain
SMART	SM00389	4.1E-18	52	114	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.2E-16	52	117	IPR009057	Homeodomain-like
Pfam	PF00046	3.7E-15	54	109	IPR001356	Homeobox domain
CDD	cd00086	4.86E-15	54	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence Send to blast
MQHVYNMCWH FRPSCLNSSL SVQHLSRRDM DVGVGVDSRE MHSEEDKGHI GKNRPRIIKT 60 RAQREGLEKF YKEHKYPTES MKLEVAHSLG LTEKQVSGWF CHRRLKDKRL LRREINANGR 120 QDRSSGIIQD RGSGFRQDSC GSTKQGDDKY FDHREVESRR LTGPEVSAAD VMRDVAVQYR 180 AESNLMEDTP SGSSSSLRDA RFSQNVESLD MATSRYLPCN EPTGLKSVKP RTGPSGYLKV 240 KGKVENASIT AVKRQLGSLY RRDGPPLSVE FDMLPPGAFE SPVQTPVDDP EYTGEPVLAP 300 TADFAEVYKQ SDSRIGYGLI SKTNSRVSDL DGASFKKSSK SAYPEYYINQ KPRQNSSMHN 360 DDRYYLGRNS STEMCKVSRR EVGVDGRYNN MFMAKRDGTE IKTSPGSSGG FRSPYTGKVN 420 REQVAPRFTN CNEASLKIME EEDSERKPSN FVRKEIKQRY FPERVLSGKV EKDYLHVERP 480 AVDESYNVDR MKMPWENEMK AAKRARDEAP SHQEYMRKAP VTIMPSQTNH PIRYGHVLRS 540 *

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence Send to blast

MQHVYNMCWH FRPSCLNSSL SVQHLSRRDM DVGVGVDSRE MHSEEDKGHI GKNRPRIIKT  60
RAQREGLEKF YKEHKYPTES MKLEVAHSLG LTEKQVSGWF CHRRLKDKRL LRREINANGR  120
QDRSSGIIQD RGSGFRQDSC GSTKQGDDKY FDHREVESRR LTGPEVSAAD VMRDVAVQYR  180
AESNLMEDTP SGSSSSLRDA RFSQNVESLD MATSRYLPCN EPTGLKSVKP RTGPSGYLKV  240
KGKVENASIT AVKRQLGSLY RRDGPPLSVE FDMLPPGAFE SPVQTPVDDP EYTGEPVLAP  300
TADFAEVYKQ SDSRIGYGLI SKTNSRVSDL DGASFKKSSK SAYPEYYINQ KPRQNSSMHN  360
DDRYYLGRNS STEMCKVSRR EVGVDGRYNN MFMAKRDGTE IKTSPGSSGG FRSPYTGKVN  420
REQVAPRFTN CNEASLKIME EEDSERKPSN FVRKEIKQRY FPERVLSGKV EKDYLHVERP  480
AVDESYNVDR MKMPWENEMK AAKRARDEAP SHQEYMRKAP VTIMPSQTNH PIRYGHVLRS  540
*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	0.0	HG975451.1 Solanum pennellii chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016550332.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1
TrEMBL	A0A2G2YBK9	0.0	A0A2G2YBK9_CAPAN; Uncharacterized protein (Fragment)
STRING	PGSC0003DMT400012008	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3436	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	2e-56	HB-other family protein