PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA12g22480

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 159aa MW: 17607.4 Da PI: 7.8407

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA12g22480	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141	3.7e-44	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C++dCv++pyfp+++p+kfa vhk+FGasnv k+l++lpe +r da+ss+vyeA+ar++dP+yG+vg+i++lq+q+e l+++la +++ CA12g22480 14 PCAACKLLRRRCTQDCVFSPYFPSDEPHKFASVHKVFGASNVNKMLQELPEYQRGDAVSSMVYEANARMKDPIYGCVGTISSLQHQIEFLQKQLAIAQA 112 7**********************************************************************************************9998 PP DUF260 100 e 100 e CA12g22480 113 E 113 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.861	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.1E-44	14	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MKESGGRKQG ATSPCAACKL LRRRCTQDCV FSPYFPSDEP HKFASVHKVF GASNVNKMLQ 60 ELPEYQRGDA VSSMVYEANA RMKDPIYGCV GTISSLQHQI EFLQKQLAIA QAEIVHMKMQ 120 QPSSMYRGGG GTXXXXXXXP PIHMQSEAHS EFEACDFL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-48	10	115	7	112	LOB family transfactor Ramosa2.1
5ly0_B	3e-48	10	115	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	9e-82	HG975451.1 Solanum pennellii chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016552419.1	1e-108	PREDICTED: LOB domain-containing protein 4-like
Swissprot	Q9SHE9	5e-62	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A2G2YBE6	1e-108	A0A2G2YBE6_CAPAN; LOB domain-containing protein 4
STRING	Solyc12g100150.1.1	5e-88	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-64	LOB domain-containing protein 4