PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000146.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 418aa    MW: 47158.4 Da    PI: 8.7508
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000146.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox34.92.5e-112382751954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +e++ LA+++gL+ +qV++WF N R +
  CCG000146.1 238 FEHflHPYPTDSEKQALAQQTGLSRTQVSNWFINARVR 275
                  665559******************************98 PP
2BELL84.41.4e-27105175272
         BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  r ++q k +kL+ +l+eV++rYk y++q+q v++sFe+vaglg+a+pY+  A k + +hF +Lk+a+ ++i
  CCG000146.1 105 RVDHQCKNSKLILMLDEVYRRYKLYCQQMQSVVASFETVAGLGNAAPYVCYAVKIVLKHFTSLKNALLDKI 175
                  7799***************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.3E-2951173IPR006563POX domain
PfamPF075268.8E-2956171IPR006563POX domain
PROSITE profilePS5007112.519216279IPR001356Homeobox domain
SMARTSM003899.9E-13219283IPR001356Homeobox domain
CDDcd000863.77E-13219280No hitNo description
SuperFamilySSF466892.4E-18222287IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-28222283IPR009057Homeodomain-like
PfamPF059209.1E-19236275IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MNYQPLSSQG LSLSLSFQLD NQRHNAVSVS GDSLKQNGEM KSSVVPFGPF TGYASILKTS  60
RFLKPAQQIL DDICGMINCA NANFPLDGLN ESEITREKIA FLSDRVDHQC KNSKLILMLD  120
EVYRRYKLYC QQMQSVVASF ETVAGLGNAA PYVCYAVKIV LKHFTSLKNA LLDKIQFTGK  180
NFDDSSVTKE KNPRHGTTEQ GLRNQNPTLN LNFIQHPVWR SQRGLPDHAV AVLKTWLFEH  240
FLHPYPTDSE KQALAQQTGL SRTQVSNWFI NARVRLWKPM VEEVHMLESQ QTQAPFDTVS  300
QSANIASDLP LEKQPRSTQL QNAYQTKRLR NELPDVSKQR QEQRNICVNN LSGNYHSAGV  360
SGSKGVSLAL GLPQNNRTDQ SWPLPMSIPH HVNLEMINMM DSAPGTAFEL QKQHFEKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A6e-16220276865Homeobox protein PKNOX1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036837.10.0PREDICTED: BEL1-like homeodomain protein 9
SwissprotQ9LZM86e-71BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A2K1ZCP00.0A0A2K1ZCP0_POPTR; Uncharacterized protein
STRINGPOPTR_0008s06130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.13e-73TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]