PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000224.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 257aa    MW: 28162.8 Da    PI: 8.7654
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000224.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.8e-181156147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+++Ed  l+++v+q+G+++W+ I+  ++ gR++k+c++rw + 
      CCG000224.1 11 KGSWSPQEDATLIKLVEQHGPRNWSMISTGIP-GRSGKSCRLRWCNQ 56
                     799*****************************.***********985 PP
2Myb_DNA-binding57.14.1e-1865107347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+ Ed ++v+a++ +G++ W+tIar ++ gRt++ +k++w++ 
      CCG000224.1  65 PFTPAEDAKIVQAHAIHGNK-WATIARLLP-GRTDNAIKNHWNST 107
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.428657IPR017930Myb domain
SuperFamilySSF466891.76E-309104IPR009057Homeodomain-like
SMARTSM007171.3E-151059IPR001005SANT/Myb domain
PfamPF002491.4E-171156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-251264IPR009057Homeodomain-like
CDDcd001671.08E-141355No hitNo description
PROSITE profilePS5129426.24958112IPR017930Myb domain
SMARTSM007173.4E-1562110IPR001005SANT/Myb domain
PfamPF002493.6E-1565107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2365111IPR009057Homeodomain-like
CDDcd001671.26E-1265108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGSVNGGDRI KGSWSPQEDA TLIKLVEQHG PRNWSMISTG IPGRSGKSCR LRWCNQLSPE  60
VQHRPFTPAE DAKIVQAHAI HGNKWATIAR LLPGRTDNAI KNHWNSTLRR KRGSVSSASS  120
ESSPVFKRST LEVSVVSESE SDSGSKRQCL HASPGHNSVN VDVGVDGPET SLTLSPPGDG  180
FVSMAVAEKL KEGVAVNGRE KDLGESFMKD AEKRCIEEMD EACVRAFIQK IIQEEVRIYF  240
DRLKTRNGVT IGSLKDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-39101113104MYB PROTO-ONCOGENE PROTEIN
1h88_C4e-381011157158MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-381011157158MYB PROTO-ONCOGENE PROTEIN
1mse_C8e-39101113104C-Myb DNA-Binding Domain
1msf_C8e-39101113104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000247.10.0PREDICTED: transcription factor MYB44-like
SwissprotQ9SN121e-53MYB77_ARATH; Transcription factor MYB77
TrEMBLB9HHT01e-165B9HHT0_POPTR; Uncharacterized protein
STRINGPOPTR_0008s07100.11e-165(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116002935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.11e-54myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]