PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000229.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 250aa    MW: 29000.9 Da    PI: 9.2731
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000229.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix40.57e-1320103186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++  + +L+ea  ++  +l+rg+l++++W+ev++++  ++ g+  +++ +qCk++++ l+k+yk +k           st+p++ +l+
  CCG000229.2  20 CWSDGATGTLVEAWGDRYINLNRGNLRQKDWKEVADAVnnQQNGVkpKKTDIQCKNRIDTLKKKYKIEKSKPPP------STWPFYYRLD 103
                  7*************************************88666665578999**************99887775......5899999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.7E-2618105No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDPSPSAAIT RPYHGGREDC WSDGATGTLV EAWGDRYINL NRGNLRQKDW KEVADAVNNQ  60
QNGVKPKKTD IQCKNRIDTL KKKYKIEKSK PPPSTWPFYY RLDSLLGTNS NATNTFKKPT  120
SVTFTVKSKT KPQNDVYPGL ASCGESSSDD DDDMAWVDER VKKKRPRMED VDLSDWAACR  180
ELARAILKFG EIYERIESSK QQQMMELEKQ RMELTKEVEF ERMNLFIDAQ LELKKKSFSR  240
DKFWKLFVFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159166RVKKKRPR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2312271e-110CU231227.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000834.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A2K1ZD921e-163A0A2K1ZD92_POPTR; Uncharacterized protein
STRINGPOPTR_0008s07140.11e-164(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.18e-68sequence-specific DNA binding transcription factors