PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG000230.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LBD

Protein Properties

Length: 163aa MW: 18095.7 Da PI: 7.7737

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG000230.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.2	8.9e-41	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+l+r+C+++C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+ dPvyG++g i lq+++ +l+++la ++ CCG000230.1 11 SCAACKFLKRRCTPNCIFAPYFRSDEPKKFARVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLTDPVYGCIGAIALLQRKMVELQVDLAIAR 108 6*********************************************************************************************9998 PP DUF260 99 ee 100 ++ CCG000230.1 109 AR 110 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.425	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.7E-40	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MRNQEPRASS SCAACKFLKR RCTPNCIFAP YFRSDEPKKF ARVHKVFGAS NVSKILIEVP 60 EEQREDTVNS LAYEAEARLT DPVYGCIGAI ALLQRKMVEL QVDLAIARAR LARYAANSPP 120 ILNDHGSMIP PLAEFPACGG LVDSFSQSSS DTMNDFSQFP FIF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-48	6	115	6	115	LOB family transfactor Ramosa2.1
5ly0_B	5e-48	6	115	6	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF144826	0.0	EF144826.1 Populus trichocarpa clone WS01118_L02 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011000944.1	1e-118	PREDICTED: LOB domain-containing protein 21-like
Swissprot	Q9SRL8	5e-61	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A9P9I7	1e-114	A9P9I7_POPTR; Uncharacterized protein
STRING	POPTR_0008s07150.1	1e-115	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	1e-57	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]