PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000387.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 550aa    MW: 60597.6 Da    PI: 9.2004
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000387.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.46.9e-34280336259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  d++v+ei+Y+g+H+he
  CCG000387.1 280 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPSCPVKKKVERSL-DGQVTEIIYKGQHDHE 336
                  8****************************************.***************8 PP
2WRKY105.23.3e-33448506159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Ct+++C+v+k+ver+a dp++v++tYeg+Hnh+
  CCG000387.1 448 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPRCKVRKHVERAAADPRAVITTYEGKHNHD 506
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-29270338IPR003657WRKY domain
PROSITE profilePS5081123.571274338IPR003657WRKY domain
SuperFamilySSF1182905.1E-26277338IPR003657WRKY domain
SMARTSM007745.2E-37279337IPR003657WRKY domain
PfamPF031061.4E-25280335IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-36433508IPR003657WRKY domain
SuperFamilySSF1182903.92E-29440508IPR003657WRKY domain
PROSITE profilePS5081137.16443508IPR003657WRKY domain
SMARTSM007742.5E-38448507IPR003657WRKY domain
PfamPF031061.7E-25449506IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MNEKPVLALG RRRLLLPVKH RRTSEFSEEV LAKTPKLYPP MSTHVNPVVV GDTTVISPPF  60
NEVPVPEHQQ PQQQQPSSRP ITITLPPRSF TETFLSSGPP GSMGFSPGPM TLLSGFFSDS  120
DDCKSFSQLL AGATASPNFK PTDDKSSSGD FSRPGNLSIV PPSPMFTMPL GLCPVALPDS  180
PGFGLFSPEG FGMIHQQAPA QVTAQAAQAN SNMHVQQEHS TPAMSSTQFL TSINNSAAQQ  240
LQQMPGSVTD SRVTVQELSG IPHADRRSES SSLAVDKPTD DGYNWRKYGQ KQVKGSEFPR  300
SYYKCTHPSC PVKKKVERSL DGQVTEIIYK GQHDHEPPQP NKRGKEGING NSNSQGNFEM  360
ATLQSGYVRK TRDRKDQESS QATPEHVSGM SDSEEVSDTE TSGRIDEDEP GHKRRITTEV  420
RVTEPASSHR TVTESRIVVQ TTSEVDLLDD GYRWRKYGQK VVKGNPYPRS YYKCTTPRCK  480
VRKHVERAAA DPRAVITTYE GKHNHDVPAA KNSSHITVNS NASQLTPQTL EKRASNNSNN  540
QQPIARLRLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-41280509878Probable WRKY transcription factor 4
2lex_A1e-41280509878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368375RKTRDRKD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017961.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9ZQ701e-162WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLB9HIB50.0B9HIB5_POPTR; Uncharacterized protein
STRINGPOPTR_0008s09140.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-132WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]