PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000438.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SBP
Protein Properties Length: 1264aa    MW: 141317 Da    PI: 8.156
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000438.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP125.32.5e-39149226178
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  +Cq e+C+adls+ak+yhrrhkvC++hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  CCG000438.1 149 VCQGEDCRADLSNAKDYHRRHKVCNAHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 226
                  6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.9E-31144211IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.325147224IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.45E-36148229IPR004333Transcription factor, SBP-box
PfamPF031101.6E-27150223IPR004333Transcription factor, SBP-box
SuperFamilySSF484032.35E-8800947IPR020683Ankyrin repeat-containing domain
SMARTSM00248890802831IPR002110Ankyrin repeat
CDDcd002048.17E-8807936No hitNo description
Gene3DG3DSA:1.25.40.207.8E-8807934IPR020683Ankyrin repeat-containing domain
SMARTSM0024821859889IPR002110Ankyrin repeat
SMARTSM00248330899928IPR002110Ankyrin repeat
PROSITE profilePS513755.42611211155IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.95211561190IPR002885Pentatricopeptide repeat
PfamPF130414.7E-911911237IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.73111911225IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.3E-611951227IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.64312261263IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1264 aa     Download sequence    Send to blast
MEATIGGKSR HFYGPVVSDL KAVGKRSLEW DLNDWKWDGD LFKASPLNSA PSDCRSRQLF  60
PTGPVLHENA GLWNCSSSCS DENDNLGDEK GKRELEKRRR VVFVEDENLN YEVGSPNLKL  120
GEQVYPIMDE DAKSGKKTKV TMTASNRAVC QGEDCRADLS NAKDYHRRHK VCNAHSKASK  180
ALVGNVMQRF CQQCSRFHVL QEFDEGKRSC RRRLAGHNKR RRKTHPENLV NEGSLNDEKG  240
SSYLLISLLR ILSNLHSNGS DQTKDQDLLS HILRSLANLA GTTNGRSLSG SLQGSQGLAN  300
ARAIVGNLDK AHDALTNGPE SARPSSSASK KDDYIISQDL LRPLGQFGTV PISDLVQKRI  360
LDNDAQVGTL QAPSGSQSIT LFPSRNNLPA KTNEPEATVG RIKLNNFDLN NAYDDSQQHV  420
ENLERSHAPV DTGMGSFSCP LWVWSDSQKT SLPHTSGKSD STFSQSPSSS SGEAQIRTDR  480
IVFKLFGKNP NDFPVALRTQ ILDWLSHSPT DIESYIRPGC IVLTIYLCLE KSKWEEVCLD  540
LGASLSRLLN TSSDSFWQTG WVYVRVQNCV SFIYNGRVVL DTPLPIKSHK NCRISSITPI  600
AVSLSERTQF VVRGFDIAQP MTRLLCAVEG KYLVQETCYD LMDGADTMNE LDKPQYLNFQ  660
CSVPNFVGRG FIEVEDHGLS SSFFPFIVAE PEVCSEIRLL EDAIQVAETA TDMHTIAERM  720
DIKNQALDFI HEMGWLLHRS RLKFRLGQLD PNLDLFPFKR FKQLIQFSMD RDWCAVVRKL  780
LAIVLDGTVD AGEHSSIELA LLDMGLLHRA VRRNCRPMVE LLLRYITDKK FGGTGTQQNQ  840
LVDGRNSRFM FKPDVVGPGG LTPLHVAACR DGAENVLDAL TDDPGLVGID AWKKARDSTG  900
LTPYDYACLR GHYSYIHLIQ RKINKKSESG NVVLDIPGSP VDCNFKQKDG NELPKVTSLH  960
TEKIKMKATH QHCKLCEQKL VCGAARTSLV YRPAMLSMVA IAAICLWSPL LHSSPTQTVR  1020
EESQETEANN ASLLLIFTPP LPHNKNTPKL KTHQQLQQSQ IPLDTHKLLL RFAFTSAATA  1080
LPSSSSPKKK HWKQGEFPGI TDTSVPRRTA IKNIKKKLDR KNKAKAWVIE AFADVGDAKN  1140
MEYTFDQMRA EDMKADTKTF CCLINGYANA SLFHKVISSV QLAARFEITE NTSLYKAVIS  1200
ACAKADDLVE MERVFKQMKD KQCLPDSRTY SMMVEAYRKE GMNDKIYYLE QEKDKMIANG  1260
ALSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-281492231084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196100KRRRV
2218224KRRRKTH
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2091030.0AC209103.1 Populus trichocarpa clone POP056-L16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011019016.10.0PREDICTED: squamosa promoter-binding-like protein 1
TrEMBLB9HIH20.0B9HIH2_POPTR; Uncharacterized protein
STRINGPOPTR_0008s09810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1