PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000459.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 371aa    MW: 41909.4 Da    PI: 6.0028
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000459.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.3e-092959131
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartm 31
                     rg+WT eEd +l+++++ +G g+W++ ar+ 
      CCG000459.1 29 RGPWTVEEDFKLINYIATHGEGRWNSLARCA 59
                     89**************************986 PP
2Myb_DNA-binding605.2e-1973120148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+WT eEd +l+d+++ +G g+W++ ar+ g++Rt+k+c++rw++yl
      CCG000459.1  73 RGPWTVEEDFKLIDYIATHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 120
                      89********************************************97 PP
3Myb_DNA-binding49.21.2e-15126169146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++ +++++ ++G++ W++Ia++++ gRt++++k++w++
      CCG000459.1 126 RGNITLEEQLMILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 169
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.3992466IPR017877Myb-like domain
SuperFamilySSF466891.31E-72758IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-102765IPR009057Homeodomain-like
SMARTSM007171.42870IPR001005SANT/Myb domain
PfamPF002493.3E-72958IPR001005SANT/Myb domain
CDDcd001673.52E-63166No hitNo description
PROSITE profilePS5129423.0468124IPR017930Myb domain
SuperFamilySSF466895.03E-3170167IPR009057Homeodomain-like
SMARTSM007173.8E-1672122IPR001005SANT/Myb domain
PfamPF002497.3E-1773120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-2374127IPR009057Homeodomain-like
CDDcd001672.38E-1275120No hitNo description
PROSITE profilePS5129418.168125175IPR017930Myb domain
SMARTSM007172.6E-14125173IPR001005SANT/Myb domain
PfamPF002492.4E-14126169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-23128174IPR009057Homeodomain-like
CDDcd001679.65E-11130169No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MSMMDVKGNS NSSSSTTQSD EEMMGDLRRG PWTVEEDFKL INYIATHGEG RWNSLARCAA  60
EQSDEEMMAD LRRGPWTVEE DFKLIDYIAT HGEGRWNSLA RCAGLKRTGK SCRLRWLNYL  120
RPDVRRGNIT LEEQLMILEL HSRWGNRWSK IAQHLPGRTD NEIKNYWRTR VQKHAKQLKC  180
DVNSKQFKDT MRYLWMPRLI ERIQAAAASP ATXXXXXXXX XXXXXAASVS PAATVSAPAN  240
NQHSISNSDV GTGNLVMAPH GINGNDFGVS HVTQSYTPEN SSTAASSDSF ATQVSPVSDL  300
TTDYYNIPIN RNTNPDYFQA GQVGYLESMI SPPGIFNHGL DFQAMEHSNN QWPMDGGDTS  360
DNMWNLEDIW F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-29241671151MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-29241671151MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor contributing to the regulation of stamen maturation and male fertility in response to jasmonate signaling. Required for correct timing of anther dehiscence. Acts as a negative regulator of abscisic acid-induced cell death. Not involved in the regulation of BOI. Regulated by MYB21 and at a lower level by MYB24. Negatively regulated by the proteasome in an SCF(COI1) E3 ubiquitin-protein ligase complex-dependent manner. {ECO:0000269|PubMed:14555693, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:20921156, ECO:0000269|PubMed:23952703}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by jasmonate and pathogen infection. {ECO:0000269|PubMed:14555693, ECO:0000269|PubMed:19091873}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027944.10.0PREDICTED: transcription factor MYB108-like
SwissprotQ9LDE13e-92MY108_ARATH; Transcription factor MYB108
TrEMBLB9HIK10.0B9HIK1_POPTR; Uncharacterized protein
STRINGPOPTR_0008s10080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.12e-89myb domain protein 108
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cheng HQ, et al.
    The cotton MYB108 forms a positive feedback regulation loop with CML11 and participates in the defense response against Verticillium dahliae infection.
    J. Exp. Bot., 2016. 67(6): p. 1935-50
    [PMID:26873979]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Chou ML, et al.
    The Direct Involvement of Dark-Induced Tic55 Protein in Chlorophyll Catabolism and Its Indirect Role in the MYB108-NAC Signaling Pathway during Leaf Senescence in Arabidopsis thaliana.
    Int J Mol Sci, 2018.
    [PMID:29937503]